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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|101291741|101295658|+|4|circRNA|UTP20|ENST00000261637.4|9,10,11,12 | circUTP20(9,10,11,12) | UTP20 | LSYIVNCFLIDDAVVKDEALAILAKLILNKAAPPTAGSMAIEKYPLVFSPQMVGNRSWIYTQK | YPLVFSPQMVGNRSWIYTQK | No | Junction | Junction | 20 | 1 | CTG | TAA | TransCirc | No |
chr12|101299681|101312276|+|9|circRNA|UTP20|ENST00000261637.4|13,14,15,16,17,18,19,20,21 | circUTP20(13,14,15,16,17,18,19,20,21) | UTP20 | LESSDQIPRKSRATVQGAFPAFLEIYQILYKAEED | LESSDQIPR | No | Alternative | Junction | 9 | 2 | CTG | TAG | TransCirc | No |
chr12|101366557|101367976|+|2|circRNA|UTP20|ENST00000261637.4|47,48 | circUTP20(47,48) | UTP20 | LLHLSLKTSKIKSSGECVLEMLDPFVSLLIDCLGSMDVKKSSSPSTRSTSTTPELPSASPNSSSRWTESCCEQENQHAHIY | KSSSPSTR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr12|101768036|101788589|-|8|circRNA|GNPTAB|NM_024312|11,10,9,8,7,6,5,4 | circGNPTAB(11,10,9,8,7,6,5,4) | GNPTAB | LCQTVPRAAQVPGLRMAIVTRLVIIQPAIGMVGIALRNPWEKHNGTY | LCQTVPR | No | Alternative | Junction | 7 | 2 | CTG | TAA | TransCirc | No |
chr12|101786011|101790057|-|3|circRNA|GNPTAB|NM_024312|5,4,3 | circGNPTAB(5,4,3) | GNPTAB | LLTHCIKVPMLVLDPALPANITLKDLPSLYPSFHSASDIFNVAKPKNPSTNVSVVVFDSTKDGFVCPCRLTLFTPG | DGFVCPCR | No | Junction | Junction | 8 | 2 | TTG | TGA | TransCirc | No |
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