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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|8965903|8968041|+|3|circRNA|TMEM9B-AS1|ENST00000525484.5|2,3,4 | circTMEM9B-AS1(2,3,4) | TMEM9B-AS1 | MGTEYVSRAAGATADVTGFPEIKHHSAGTRVAGLDVLSPDCPVKVLSL | HHSAGTR | No | Alternative | Junction | 7 | 2 | ATG | TGA | TransCirc | No |
chr11|92352095|92355404|+|1|circRNA|FAT3|ENST00000409404.6|1 | circFAT3(1) | FAT3 | LQQTQILVPMENSTTTLKIKLISFQFTPRVVSSP | LQQTQILVPMENSTTTLK | No | Alternative | Alternative | 18 | 1 | CTG | TAA | riboCIRC,TransCirc | No |
chr11|92352095|92355404|+|1|circRNA|FAT3|ENST00000409404.6|1 | circFAT3(1) | FAT3 | MMPTLASMEKCYLQYQMEIRIVALILIWRLGSLKSLCPWIENTQTSISLISPSMT | CYLQYQMEIR | No | Alternative | Alternative | 10 | 1 | ATG | TAG | riboCIRC,TransCirc | No |
chr11|93691682|93706897|+|8|circRNA|CEP295|ENST00000325212.10|11,12,13,14,15,16,17,18 | circCEP295(11,12,13,14,15,16,17,18) | CEP295 | LGAHWPMIRLVVFNWLAKRMSVVMTMMKQLLKVIH | MSVVMTMMKQLLK | No | Junction | Junction | 13 | 1 | TTG | TAA | TransCirc | No |
chr11|93736693|93738499|-|3|circRNA|TAF1D|ENST00000323981.6|5,4,3 | circTAF1D(5,4,3) | TAF1D | MITLLIAAYLKLSVSLTHLKGRKETPFENLFVHLKVFTQVIHQVTHLLNQYH | MITLLIAAYLK | No | Junction | Junction | 11 | 1 | ATG | TGA | NA | No |
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