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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|85598656|85626753|-|2|circRNA|DLG2|NM_001142699|3,2 | circDLG2(3,2) | DLG2 | LEEYCKKLRKPEEQLLKNAVKKVMGIFKSSLFQALLEDSAWISKLNTEVVCNSYLALGLNPAGSN | SSLFQALLEDSAWISK | No | Junction | Junction | 16 | 3 | CTG | TGA | TransCirc | No |
chr11|85733938|85758069|-|6|circRNA|SYTL2|NM_001162951|6,5,4,3,2,1 | circSYTL2(6,5,4,3,2,1) | SYTL2 | LSESKEKSTVADTSIQKLEKSKQTLPGLSNGSQIKAPIPKARKMIYKSTDLNKDDNQSFPRQRTDSLKARGAPRGILKRNSSSSSTDSETLRYNHNFEPKSKIVSPGLTIHERISEKEHSLEDNSSPNSLEPLKHVRFSAVKDELPQSPGLIHGREVGEFSVLESDRLKNGMEDAGDTEEFQSDPKPSQYRKPSLFHQSTSSPYVSKSETHQPMTSGSFPINGLHSHSEVLTARPQSMENSPTINEPKDKSSELTRLESVLPRSPAGAERE | LESVLPRSPAGAER | No | Junction | Junction | 14 | 3 | TTG | TAA | TransCirc | No |
chr11|85981128|85981988|-|3|circRNA|PICALM|ENST00000530692.5|5,4,3 | circPICALM(5,4,3) | PICALM | LGDLTGNQRLHQQPLGMLQQWWTSQTNSGLSEPEPSCCQTPT | LGDLTGNQR | No | Alternative | Junction | 9 | 3 | CTG | TAG | TransCirc | No |
chr11|85981744|85996929|-|4|circRNA|PICALM|NM_001008660|15,14,13,12 | circPICALM(15,14,13,12) | PICALM | LASEMEPLRTHQSCPMICLICSSQLFTHLYILCQLLLR | LASEMEPLR | No | Alternative | Junction | 9 | 1 | TTG | TAG | TransCirc | No |
chr11|86011138|86012280|-|1|ciRNA|PICALM|NM_001008660|6 | ciPICALM(6) | PICALM | LEIDVSAVLNGVKCGTCLHTNMYLGNCEEKYYGTN | LEIDVSAVLNGVK | No | Alternative | Alternative | 13 | 1 | TTG | TAG | NA | No |
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