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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|68347846|68365702|+|4|circRNA|LRP5|ENST00000294304.11|2,3,4,5 | circLRP5(2,3,4,5) | LRP5 | MAAAPTCACCPQASLSTHAPAPRVCSCRTTAGRVRQPRRSCYLPTAGTYGWWTPAESSWSPPSWSAAWRMRPQWTSSFPREPCTGQT | MAAAPTCACCPQASLSTHAPAPR | No | Alternative | Junction | 23 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|68347846|68365702|+|4|circRNA|LRP5|ENST00000294304.11|2,3,4,5 | circLRP5(2,3,4,5) | LRP5 | MAAAPTCACCPQASLSTHAPAPRVCSCRTTAGRVRQPRRSCYLPTAGTYGWWTPAESSWSPPSWSAAWRMRPQWTSSFPREPCTGQT | RSCYLPTAGTYGWWTPAESSWSPPSWSAAWR | No | Alternative | Junction | 31 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|68347846|68390052|+|6|circRNA|LRP5|ENST00000294304.11|2,3,4,5,6,7 | circLRP5(2,3,4,5,6,7) | LRP5 | MGRSGVCWSMPPSGGPTAWPWTCRRGSSTGETPRQTRSSLAAPAICQPPGRTAGGRRRSQAGVHHRGQRPGGCGRSGLPVFQGSRVLDRRERGGHQADLPEPDGGRRAERGHLRPGLSRRPRLRLGGQEAVLDGLRDQPHRGGQPQWHIPEGALLAGP | GSSTGETPR | No | Alternative | Junction | 9 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|68347846|68390052|+|6|circRNA|LRP5|ENST00000294304.11|2,3,4,5,6,7 | circLRP5(2,3,4,5,6,7) | LRP5 | MGRSGVCWSMPPSGGPTAWPWTCRRGSSTGETPRQTRSSLAAPAICQPPGRTAGGRRRSQAGVHHRGQRPGGCGRSGLPVFQGSRVLDRRERGGHQADLPEPDGGRRAERGHLRPGLSRRPRLRLGGQEAVLDGLRDQPHRGGQPQWHIPEGALLAGP | QTRSSLAAPAICQPPGR | No | Junction | Junction | 17 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|68347846|68390052|+|6|circRNA|LRP5|ENST00000294304.11|2,3,4,5,6,7 | circLRP5(2,3,4,5,6,7) | LRP5 | MGRSGVCWSMPPSGGPTAWPWTCRRGSSTGETPRQTRSSLAAPAICQPPGRTAGGRRRSQAGVHHRGQRPGGCGRSGLPVFQGSRVLDRRERGGHQADLPEPDGGRRAERGHLRPGLSRRPRLRLGGQEAVLDGLRDQPHRGGQPQWHIPEGALLAGP | RGSSTGETPR | No | Alternative | Junction | 10 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
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