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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|127949868|127978089|-|4|circRNA|SAP130|ENST00000357702.9|18,17,16,15 | circSAP130(18,17,16,15) | SAP130 | MSQCVQDPPLLCFVTIGTPGKLLTTTFRGTVTSGSKNGSSENPHSSSAS | GTVTSGSKNGSSENPHSSSAS | No | Junction | Junction | 21 | 1 | ATG | TGA | TransCirc | No |
chr2|127949868|127978089|-|4|circRNA|SAP130|ENST00000357702.9|18,17,16,15 | circSAP130(18,17,16,15) | SAP130 | MSQCVQDPPLLCFVTIGTPGKLLTTTFRGTVTSGSKNGSSENPHSSSAS | LLTTTFRGTVTSGSK | No | Alternative | Junction | 15 | 1 | ATG | TGA | TransCirc | No |
chr11|67608551|67609635|+|2|circRNA|NDUFV1|ENST00000322776.10|3,4 | circNDUFV1(3,4) | NDUFV1 | LVQDKGDPAEGARLDPGRDQDIGFEGPWRRWLPHWPQVELHE | GDPAEGAR | No | Alternative | Alternative | 8 | 2 | CTG | TAA | TransCirc | No |
chr11|68044344|68044924|+|1|ciRNA|TCIRG1|NM_006019|9 | ciTCIRG1(9) | TCIRG1 | LGLAGDPRVPEGPRREQPEASPPLRPPLLPGRGVSASLPASGSLHLGFA | LGLAGDPR | No | Alternative | Junction | 8 | 1 | CTG | TAG | NA | No |
chr11|68044344|68044924|+|1|ciRNA|TCIRG1|NM_006019|9 | ciTCIRG1(9) | TCIRG1 | LRVRLGSFSWAVPRRQHACLSQAIANPCGVFGPPPGQSRADHLTSERGEGAAQ | LGSFSWAVPR | No | Alternative | Alternative | 10 | 2 | TTG | TGA | NA | No |
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