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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|4929221|4932956|+|3|circRNA|UHRF1|ENST00000612630.4|3,4,5 | circUHRF1(3,4,5) | UHRF1 | MNSRDVRARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGWRTAIPSSTTRSA | ELYANVVLGWR | No | Junction | Junction | 11 | 2 | ATG | TGA | TransCirc | No |
chr19|49614532|49616219|+|3|circRNA|PRR12|ENST00000418929.6|7,8,9 | circPRR12(7,8,9) | PRR12 | LGRPRTPYLLGVALHLPLRPQHHLPSLRPLKRRHLRSPQSRLLRRPCLSPLPPRSPPSCGLLRRKRRRRR | RPCLSPLPPR | No | Alternative | Alternative | 10 | 3 | CTG | TGA | TransCirc | No |
chr19|49650867|49654870|+|3|circRNA|SCAF1|ENST00000360565.7|7,8,9 | circSCAF1(7,8,9) | SCAF1 | LGMAARRPRRPPRRPLAPPRVVTATAAAGGPCHPPSRTSRTTTSSPSSGPSRWAGLTSPTPEDPLLLRPPHLSGRSCTTPRD | LGMAARRPR | No | Alternative | Alternative | 9 | 1 | CTG | TGA | TransCirc | No |
chr19|49807750|49808413|-|1|ciRNA|FUZ|NM_001171937|9 | ciFUZ(9) | FUZ | LCDSTSVSGRHSAPTAQAGTLSPRSHKMGVGGGVGGSGGTQYALGHRAVVFLEI | HSAPTAQAGTLSPR | No | Alternative | Junction | 14 | 1 | CTG | TGA | NA | No |
chr19|49807750|49808413|-|1|ciRNA|FUZ|NM_001171937|9 | ciFUZ(9) | FUZ | LSPRSHKMGVGGGVGGSGGTQYALGHRAVVFLEI | MGVGGGVGGSGGTQYALGHR | No | Alternative | Alternative | 20 | 1 | CTG | TGA | NA | No |
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