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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|45698546|45698900|+|2|circRNA|QPCTL|ENST00000012049.9|4,5 | circQPCTL(4,5) | QPCTL | MLLDLLGAPNPTFYSHFPRTVRWFHRLRSIGSPGDPATALLGW | LRSIGSPGDPATALLGW | No | Junction | Junction | 17 | 1 | ATG | TGA | TransCirc | No |
chr19|45822755|45830204|-|8|circRNA|SYMPK|ENST00000593504.5|20,19,18,17,16,15,14,13 | circSYMPK(20,19,18,17,16,15,14,13) | SYMPK | LPKLIKLNPIVVKEVFNRLLGTQHGWQALVGARKFSVSATC | LLGTQHGWQALVGAR | No | Junction | Junction | 15 | 1 | CTG | TGA | TransCirc | No |
chr19|45828969|45830204|-|2|circRNA|SYMPK|ENST00000245934.11|14,13 | circSYMPK(14,13) | SYMPK | MCGPAWTWPSPGSTRSTTPTWPQVPRAPWTSMRTASSACCLACRRNQTRRMGWQALVGARKFSVSATC | TASSACCLACR | No | Alternative | Junction | 11 | 2 | ATG | TGA | TransCirc | No |
chr19|46839464|46846142|-|2|circRNA|AP2S1|ENST00000352203.8|3,2 | circAP2S1(3,2) | AP2S1 | LLTASLFCSSGTLRSFTAAMLASTSASVWMSMTTTWLTWRPFTTSWRSALSSSRTGQARRAWPSGTCSLMMMRNRS | AWPSGTCSLMMMRNR | No | Alternative | Junction | 15 | 2 | TTG | TGA | TransCirc | No |
chr19|46839464|46846142|-|2|circRNA|AP2S1|ENST00000352203.8|3,2 | circAP2S1(3,2) | AP2S1 | LLTASLFCSSGTLRSFTAAMLASTSASVWMSMTTTWLTWRPFTTSWRSALSSSRTGQARRAWPSGTCSLMMMRNRS | LLTASLFCSSGTLR | No | Alternative | Junction | 14 | 2 | TTG | TGA | TransCirc | No |
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