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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|44871852|44874478|+|3|circRNA|PVRL2|NM_002856|3,4,5 | circPVRL2(3,4,5) | PVRL2 | MPWAWAALSRSSLSEPSPRTKLRPRRSRSARTLRQWPSASPKRAAHLPGSPGSHPWTGKPKRLRCQGPWPELSLSPAASPWCPRAEQMVSRSPAKWSMRASRNQP | SSLSEPSPRTK | No | Junction | Junction | 11 | 3 | ATG | TGA | TransCirc | No |
chr19|45057898|45059264|+|1|ciRNA|CLASRP|ENST00000221455.7|7 | ciCLASRP(7) | CLASRP | LSSRSAVAPDSLSLGGGVPSLPSPPAVPGHRFCVSSLTLCGAPRAYEPCLSPYPAPGHTSLLLPLSHSCPPPFRPSSASLISHF | FCVSSLTLCGAPR | No | Alternative | Junction | 13 | 1 | CTG | TAG | NA | No |
chr19|45057898|45059264|+|1|ciRNA|CLASRP|ENST00000221455.7|7 | ciCLASRP(7) | CLASRP | LSSRSAVAPDSLSLGGGVPSLPSPPAVPGHRFCVSSLTLCGAPRAYEPCLSPYPAPGHTSLLLPLSHSCPPPFRPSSASLISHF | SAVAPDSLSLGGGVPSLPSPPAVPGHR | No | Junction | Junction | 27 | 1 | CTG | TAG | NA | No |
chr19|45258988|45263367|+|3|circRNA|MARK4|ENST00000587566.5|2,3,4 | circMARK4(2,3,4) | MARK4 | MAPWAVAAPRTKARPGPAAHWVPVAGTPSPPVPRSSPTWATTAC | ARPGPAAHWVPVAGTPSPPVPR | No | Alternative | Alternative | 22 | 3 | ATG | TGA | TransCirc | No |
chr19|45258988|45263367|+|3|circRNA|MARK4|ENST00000587566.5|2,3,4 | circMARK4(2,3,4) | MARK4 | MAPWAVAAPRTKARPGPAAHWVPVAGTPSPPVPRSSPTWATTAC | ARPGPAAHWVPVAGTPSPPVPRSSPTWATTAC | No | Alternative | Alternative | 32 | 3 | ATG | TGA | TransCirc | No |
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