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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|103021182|103040820|+|1|ciRNA|ATP6V1C1|ENST00000518857.5|1 | ciATP6V1C1(1) | ATP6V1C1 | LLSRQMWNKKIVVDKMSLIKIKLPFIFKYIYGKKLW | IKLPFIFK | No | Alternative | Alternative | 8 | 3 | TTG | TAG | NA | No |
chr8|103021182|103040820|+|1|ciRNA|ATP6V1C1|ENST00000518857.5|1 | ciATP6V1C1(1) | ATP6V1C1 | MALPGWGVLVRPKHELRSLPGRDAGGCGGRDRGVGAGAGWVAVSGFSAPIHRLGPRFRL | GVGAGAGWVAVSGFSAPIHR | No | Alternative | Alternative | 20 | 1 | ATG | TAA | NA | No |
chr8|103062954|103066447|+|4|circRNA|ATP6V1C1|NM_001695|9,10,11,12 | circATP6V1C1(9,10,11,12) | ATP6V1C1 | LPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDCSFRGPRQLPV | EVLHELYKHLDSSAAAIIDCSFR | No | Junction | Junction | 23 | 2 | TTG | TAA | TransCirc | No |
chr8|103246293|103246684|-|1|circRNA|BAALC-AS1|ENST00000499522.6|4 | circBAALC-AS1(4) | BAALC-AS1 | MNREHSASIPVPLVALQSAGTRRNQKPPGRAFCLYGVKAVSSNLCFLKQRNNLDETNFPQRKGRAHSELVKKMPGAGSILKWKDLLRV | AVSSNLCFLK | No | Alternative | Junction | 10 | 2 | ATG | TGA | TransCirc | No |
chr8|103885297|103886223|+|1|circRNA|RIMS2|ENST00000504942.6|4 | circRIMS2(4) | RIMS2 | LCPEIRIEDTTKGKKERNIHSMLLRIPQCLDLHQIMLIGDLNMNLSFMKTLII | ERNIHSMLLR | No | Alternative | Alternative | 10 | 3 | CTG | TAA | TransCirc | No |
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