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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|38844122|38845647|-|1|ciRNA|HNRNPL|NM_001533|4 | ciHNRNPL(4) | HNRNPL | LRCLGQGQEKATDGLSGQSCNRVDVSDLVEGCERAETEKVVWQKRLLVAMGRGADYERTLASDCSPGAALSPSTPFWSLNLRLVAGQ | LLVAMGR | No | Alternative | Alternative | 7 | 2 | TTG | TGA | NA | No |
chr19|38844122|38845647|-|1|ciRNA|HNRNPL|NM_001533|4 | ciHNRNPL(4) | HNRNPL | MGLSFAGKQVFLRVGTLAGLDSGHSLSQHVSADHGSGCHVPDAFTEPSD | MGLSFAGK | No | Junction | Junction | 8 | 3 | ATG | TGA | NA | No |
chr19|38844122|38845647|-|1|ciRNA|HNRNPL|NM_001533|4 | ciHNRNPL(4) | HNRNPL | MSYEQIGAYTQGGGNSLCKGCKVRRSLCWMEKLKDLRIAKWLASRRVWNRHWKKLLGHPRQRCDAWGRGRKKPLMDFQGRAVIELMFQI | CDAWGRGR | No | Alternative | Alternative | 8 | 1 | ATG | TAG | NA | No |
chr19|38844122|38845647|-|1|ciRNA|HNRNPL|NM_001533|4 | ciHNRNPL(4) | HNRNPL | MSYEQIGAYTQGGGNSLCKGCKVRRSLCWMEKLKDLRIAKWLASRRVWNRHWKKLLGHPRQRCDAWGRGRKKPLMDFQGRAVIELMFQI | KLLGHPR | No | Alternative | Alternative | 7 | 1 | ATG | TAG | NA | No |
chr19|39169757|39172916|+|1|ciRNA|PAK4|ENST00000602004.1|2 | ciPAK4(2) | PAK4 | LDSLPWSVGTRRGRRPRGTRPGLHPAGGDGCAWGLTLPVPSPAWRGEAPRPTSWP | LDSLPWSVGTR | No | Alternative | Alternative | 11 | 2 | CTG | TAG | NA | No |
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