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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|38130497|38130772|+|1|circRNA|SIPA1L3|NM_015073|10 | circSIPA1L3(10) | SIPA1L3 | LRTALPGGDDQWLGDGGHDASAERARAAGLPREVRRHGGRG | ARAAGLPR | No | Alternative | Junction | 8 | 2 | TTG | TGA | TransCirc | No |
chr19|38130497|38164906|+|6|circRNA|SIPA1L3|NM_015073|10,11,12,13,14,15 | circSIPA1L3(10,11,12,13,14,15) | SIPA1L3 | LEVWAFVAGVARPLGGPTTQTGGGRSPLPPQLPAKARATDRSCTPPAPAPPRDWRGAAETHRGSPGDDQWLGDGGHDASAERARAAGLPREVRRHGGRG | ATDRSCTPPAPAPPR | No | Alternative | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
chr19|38130497|38164906|+|6|circRNA|SIPA1L3|NM_015073|10,11,12,13,14,15 | circSIPA1L3(10,11,12,13,14,15) | SIPA1L3 | LEVWAFVAGVARPLGGPTTQTGGGRSPLPPQLPAKARATDRSCTPPAPAPPRDWRGAAETHRGSPGDDQWLGDGGHDASAERARAAGLPREVRRHGGRG | GAAETHR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr19|38130497|38164906|+|6|circRNA|SIPA1L3|NM_015073|10,11,12,13,14,15 | circSIPA1L3(10,11,12,13,14,15) | SIPA1L3 | LEVWAFVAGVARPLGGPTTQTGGGRSPLPPQLPAKARATDRSCTPPAPAPPRDWRGAAETHRGSPGDDQWLGDGGHDASAERARAAGLPREVRRHGGRG | LEVWAFVAGVARPLGGPTTQTGGGR | No | Alternative | Junction | 25 | 2 | CTG | TGA | TransCirc | No |
chr19|38141183|38164906|+|5|circRNA|SIPA1L3|NM_015073|11,12,13,14,15 | circSIPA1L3(11,12,13,14,15) | SIPA1L3 | LHVPGQGSTARQATQAPWKYGPLWRGSRGRWEVPPRRQAAGGLPCPRSCRPKQGLPTEAVLLRLQHPHGTGGGQPRPTEAAQGLAGDLRHEYLGAQDGAGKHHSWGPAPLPQQCSLAVERARIP | GRWEVPPR | No | Alternative | Junction | 8 | 3 | CTG | TAA | riboCIRC,TransCirc | No |
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