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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|288192|291284|-|1|ciRNA|PPAP2C|NM_003712|1 | ciPPAP2C(1) | PPAP2C | LRAPSQARGSPRPRPRGMGVARGPGSRGQHPPPRQQEVCAEGPRARLHPAPPGLGGESRGPGRWGRPRVTPAGRPRLRPWGGRSRCARRGLTLGPGTRCVGGIRTRARAGRPSRPAGSGGGDTGDEGWVPGFG | GLTLGPGTRCVGGIR | No | Alternative | Alternative | 15 | 2 | CTG | TGA | NA | No |
chr19|288192|291284|-|1|ciRNA|PPAP2C|NM_003712|1 | ciPPAP2C(1) | PPAP2C | LRAPSQARGSPRPRPRGMGVARGPGSRGQHPPPRQQEVCAEGPRARLHPAPPGLGGESRGPGRWGRPRVTPAGRPRLRPWGGRSRCARRGLTLGPGTRCVGGIRTRARAGRPSRPAGSGGGDTGDEGWVPGFG | GMGVARGPGSR | No | Alternative | Alternative | 11 | 2 | CTG | TGA | NA | No |
chr19|288192|291284|-|1|ciRNA|PPAP2C|NM_003712|1 | ciPPAP2C(1) | PPAP2C | LRAPSQARGSPRPRPRGMGVARGPGSRGQHPPPRQQEVCAEGPRARLHPAPPGLGGESRGPGRWGRPRVTPAGRPRLRPWGGRSRCARRGLTLGPGTRCVGGIRTRARAGRPSRPAGSGGGDTGDEGWVPGFG | GPGRWGRPR | No | Alternative | Alternative | 9 | 2 | CTG | TGA | NA | No |
chr19|288192|291284|-|1|ciRNA|PPAP2C|NM_003712|1 | ciPPAP2C(1) | PPAP2C | LRGCERECYLGCEKSSSLLSGESRGGRPPGQGRCVGPQGPAGERTSQLRKSLGDPGVGGTLPGRTRPRLRASLQGNAEAARPRPSEDPGGGDLA | CVGPQGPAGER | No | Alternative | Junction | 11 | 2 | CTG | TGA | NA | No |
chr19|288192|291284|-|1|ciRNA|PPAP2C|NM_003712|1 | ciPPAP2C(1) | PPAP2C | LVRVEVGGLQAKAGVWGPKAQLVREPHSSVRALGTRVLGGPSRDGHAPGCAQVCRGTRRLRALVPPRTLEAGTSREDQTSLRAPHCARPPRLGGPRVPGPGGWGSREARGAGASIPRPGSRKSVRRGRARASIPPRLAWEVSHAGPGGGGGRGLPRQDVRASAPGVGAPAARGEG | AGVWGPK | No | Alternative | Junction | 7 | 3 | CTG | TGA | NA | No |
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