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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|2076810|2078679|-|2|circRNA|MOB3A|NM_130807|4,3 | circMOB3A(4,3) | MOB3A | LFTWWTSLTASTSSTAPSATAARSSPAPSCRGAPSMSTAGRMSISSGSPRHSPRPGTWTC | SSPAPSCR | No | Alternative | Alternative | 8 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|2076810|2078679|-|2|circRNA|MOB3A|NM_130807|4,3 | circMOB3A(4,3) | MOB3A | LFTWWTSLTASTSSTAPSATAARSSPAPSCRGAPSMSTAGRMSISSGSPRHSPRPGTWTC | SSPAPSCRGAPSMSTAGR | No | Alternative | Alternative | 18 | 3 | CTG | TGA | TransCirc | No |
chr19|2076810|2078679|-|2|circRNA|MOB3A|NM_130807|4,3 | circMOB3A(4,3) | MOB3A | LQTVRKILSRLFRVFVHVYIHHFDRIAQMGSEAHVNTCYKHFYYFVKEFGLIDTKELEPLVRGRAVGLGECFVASRVGQHPQPAGPGPLYRSPGEQASPRCPTPS | AVGLGECFVASR | No | Alternative | Junction | 12 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|2078139|2078679|-|1|circRNA|MOB3A|NM_130807|3 | circMOB3A(3) | MOB3A | MSNPFLKQVFNKDKTFRPKRKFEPGTQRFELHKKAQASLNAGLDLRLAVQLPPGEDLNDWVAVHVVDFFNRVNLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEHKFRKPTALSAPRYMDLLMDWIEAQINNEDLFPTNVGPRESCGAW | YMDLLMDWIEAQINNEDLFPTNVGPR | No | Junction | Junction | 26 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr19|2249543|2249954|-|1|ciRNA|Unknown|T165982|1 | ciUnknown(1).J | Unknown | LKEDGGAKLGAGPHIPSSRCRTTRRCPPGSRSQAPSRRREGKAACLSPVLQTPKVARSRGPQRALCTAPRKACS | EGKAACLSPVLQTPK | No | Alternative | Alternative | 15 | 3 | CTG | TAG | NA | No |
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