top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|16829790|16847113|+|4|circRNA|SIN3B|NM_001297595|2,3,4,5 | circSIN3B(2,3,4,5) | SIN3B | LKRRCSPRWPTSSGARRTCSQSLDSSCPKPSGLW | WPTSSGARR | No | Alternative | Alternative | 9 | 2 | CTG | TAG | TransCirc | No |
chr19|17101659|17102557|+|1|circRNA|MYO9B|ENST00000595618.5|2 | circMYO9B(2) | MYO9B | LGGMLKPGGRQDECERGRQLGPPGAGGLPPAHLPPAVHHREPGLVPRDCHQGQHHLGRHQGRHCQPAAGRHQMLCAGGGQRVGRRGMGAGRQRLACAPGAAMAPAGTGRAPSGGWLLLPAAGAQRRWNHQVRAYAAGGAGHSHPAPSGAWPPATAAGGL | APSGGWLLLPAAGAQR | Yes | Alternative | Alternative | 16 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|17101659|17102557|+|1|circRNA|MYO9B|ENST00000595618.5|2 | circMYO9B(2) | MYO9B | LGGMLKPGGRQDECERGRQLGPPGAGGLPPAHLPPAVHHREPGLVPRDCHQGQHHLGRHQGRHCQPAAGRHQMLCAGGGQRVGRRGMGAGRQRLACAPGAAMAPAGTGRAPSGGWLLLPAAGAQRRWNHQVRAYAAGGAGHSHPAPSGAWPPATAAGGL | LACAPGAAMAPAGTGR | Yes | Alternative | Alternative | 16 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|17101659|17102557|+|1|circRNA|MYO9B|ENST00000595618.5|2 | circMYO9B(2) | MYO9B | LGGMLKPGGRQDECERGRQLGPPGAGGLPPAHLPPAVHHREPGLVPRDCHQGQHHLGRHQGRHCQPAAGRHQMLCAGGGQRVGRRGMGAGRQRLACAPGAAMAPAGTGRAPSGGWLLLPAAGAQRRWNHQVRAYAAGGAGHSHPAPSGAWPPATAAGGL | LGGMLKPGGR | Yes | Alternative | Alternative | 10 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|17101659|17102557|+|1|circRNA|MYO9B|ENST00000595618.5|2 | circMYO9B(2) | MYO9B | MSVKEAGSSGRREQAAYHLHIYPQLSTTESQASCRVTATKDSTTSDVIKDAIASLRLDGTKCYVLVEVKESGGEEWVLDANDSPVHRVLLWPRRAQDEHPQEDGYYFLLQERNADGTIKYVHMQLVAQATATRRLVERGLLPRQQADFDDLCNLPELTEGNLLKNLKHRFLQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAGPVLELQDTRAPSLGGMLKPGGRQDECERGRQLGPPGAGGLPPAHLPPAVHHREPGLVPRDCHQGQHHLGRHQGRHCQPAAGRHQMLCAGGGQRVGRRGMGAGRQRLACAPGAAMAPAGTGRAPSGGWLLLPAAGAQRRWNHQVRAYAAGGAGHSHPAPSGAWPPATAAGGL | APSLGGMLKPGGRQDECER | Yes | Alternative | Junction | 19 | 2 | ATG | TGA | riboCIRC,TransCirc | No |
Page 1 of 1
bottom of page