top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|15927543|15929456|-|1|ciRNA|CYP4F11|ENST00000326742.12|2 | ciCYP4F11(2) | CYP4F11 | MLCYCSTLSLQPGLVSPSSTILPSSSTLGLLPAMLGGMRGSAHPWLGAFLRTRAELVVVGAGKHQRPSSLSPPQASVWPLQGPGPSSCFSLSHVPLSFMYSRTPHVSVSSLHCHLSLPLCSGHHWGSKKPQFRALSSRKPRA | GSAHPWLGAFLRTR | No | Junction | Junction | 14 | 2 | ATG | TGA | NA | No |
chr19|16500791|16501551|+|1|circRNA|C19orf44|NM_001288834|2 | circC19orf44(2) | C19orf44 | MLVFQRELTESSLGVHSNSRPRTQTKLPRIKPVNFLSPKIMHRTRRSVGF | ELTESSLGVHSNSRPR | No | Alternative | Alternative | 16 | 1 | ATG | TAA | TransCirc | No |
chr19|16500791|16509988|+|4|circRNA|C19orf44|NM_001288834|2,3,4,5 | circC19orf44(2,3,4,5) | C19orf44 | LAKSSEPRRPLGRMPRGRPRRGAGHHRERPPLQRGMRARSRSISVPARLLPSSRTALPACSHHLKPPW | SRSISVPAR | Yes | Alternative | Alternative | 9 | 2 | CTG | TGA | TransCirc | No |
chr19|16503064|16509988|+|3|circRNA|C19orf44|NM_001288834|3,4,5 | circC19orf44(3,4,5) | C19orf44 | MQPPSEAPMVNTVSSAYSEDFENSPSLTASEPTAHSKESLDRTLDALSESSSSVKTDLPQTAESRKKSGRHVTRVLVKDTAVQTPDPAFTYEWTKGPISTESIYCTQRGTLQRKAFSDITPANLPGSRQNPSQHSLKSRLPTESRFQ | AFSDITPANLPGSR | No | Alternative | Junction | 14 | 1 | ATG | TGA | TransCirc | No |
chr19|16530942|16532597|-|1|ciRNA|CHERP|NM_006387|5 | ciCHERP(5) | CHERP | LHALSSPLDPGLTCHIAVSWGPLSPALLPLMGQLLGVSLLPSQPRPPWPLCLSPALVTDLHAHTRGHLTLLSHQDPPLGSPSPALTHLSGFNRATSADPLSPPSPHPSHCCCLHPPQGWVGISFYRVTGALLTKISKKEKKNNRTPGQRPARAGGDKHCY | TPGQRPAR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | NA | No |
Page 1 of 1
bottom of page