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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|100709458|100718280|-|7|circRNA|PABPC1|NM_002568|8,7,6,5,4,3,2 | circPABPC1(8,7,6,5,4,3,2) | PABPC1 | MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQRSVLWTP | MASVRAVPNPVINPYQPAPPSGYFMAAIPQR | No | Junction | Junction | 31 | 1 | ATG | TGA | TransCirc | No |
chr8|100715461|100718280|-|3|circRNA|PABPC1|NM_002568|4,3,2 | circPABPC1(4,3,2) | PABPC1 | LLDDLSLVKNEKLNLELGQKNSPMFTSRILEKTWMMSALRISLASLRSVLWTP | ISLASLR | No | Alternative | Junction | 7 | 3 | TTG | TGA | TransCirc | No |
chr8|101367622|101369738|+|2|circRNA|NACAP1|ENST00000419462.1|2,3 | circNACAP1(2,3) | NACAP1 | LKLMKNQSVKQNRGGVKRRHGRLGSNWVFNRLQELLESPSGNLRISSLSSQNQMSTRARFGYLHGFWGSQD | LQELLESPSGNLR | No | Alternative | Alternative | 13 | 3 | CTG | TGA | NA | No |
chr8|101552714|101558812|+|2|circRNA|GRHL2|ENST00000251808.7|3,4 | circGRHL2(3,4) | GRHL2 | LKISHQFSWPHLCTIPGEMGKSNEWLSLNRLSMTCPRWPPTAPISKTTSAALRTAHTARASRTQPQRFLETRGCCL | WPPTAPISK | No | Alternative | Junction | 9 | 3 | CTG | TAA | TransCirc | No |
chr8|101599056|101632365|+|4|circRNA|GRHL2|ENST00000251808.7|8,9,10,11 | circGRHL2(8,9,10,11) | GRHL2 | LAAIPLQKKSDITYFKTMPDLHSQPVLFIPDVHFANLQRTGQPITRRALIRLETLKRLHIMLFPLPGT | LHIMLFPLPGT | No | Alternative | Junction | 11 | 3 | TTG | TGA | TransCirc | No |
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