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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|10805967|10808429|+|1|ciRNA|DNM2|NM_001005360|13 | ciDNM2(13) | DNM2 | LIILGDGLRANTLAGPSGHILPTQKALCAIQGQG | LIILGDGLR | No | Alternative | Alternative | 9 | 1 | TTG | TAG | NA | No |
chr19|10823899|10825056|+|1|ciRNA|DNM2|NM_001005360|17 | ciDNM2(17) | DNM2 | LGSSGPGQAGLSGASGAVRGQPEVSYWWDNRADGFQRTRTWPRPQSPLSTSPPACR | LGSSGPGQAGLSGASGAVR | No | Alternative | Alternative | 19 | 1 | TTG | TGA | NA | No |
chr19|11007901|11013112|+|3|circRNA|SMARCA4|NM_001128844|15,16,17 | circSMARCA4(15,16,17) | SMARCA4 | MGPSSSSCLSRGGGRAAAGSTASHPARGGEEEDSRSRQR | GGGRAAAGSTASHPAR | No | Alternative | Junction | 16 | 2 | ATG | TGA | TransCirc | No |
chr19|11033289|11035132|+|4|circRNA|SMARCA4|NM_001128844|27,28,29,30 | circSMARCA4(27,28,29,30) | SMARCA4 | LHRQQRGGEDPSCSQVQAQRGPEGDPGRHVRPEVLQP | GPEGDPGR | No | Alternative | Alternative | 8 | 3 | CTG | TGA | TransCirc | No |
chr19|11100222|11102786|+|2|circRNA|LDLR|ENST00000558518.5|2,3 | circLDLR(2,3) | LDLR | LQIRGLQLWGPCQPLHSSVLEVRWPSGLRQRLRRARLSGRQMRKKRVPVPRREMHLLQVGLRWQR | EMHLLQVGLR | No | Alternative | Junction | 10 | 2 | CTG | TGA | TransCirc | No |
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