top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|9593875|9595017|-|1|ciRNA|PPP4R1|ENST00000400556.7|3 | ciPPP4R1(3) | PPP4R1 | LFFLCSMCIFFLLKWKWKGGFINFSRENESIHFKGGIINRHNLSHQVLFIITA | GGFINFSRENESIHFK | No | Alternative | Junction | 16 | 2 | TTG | TGA | NA | No |
chr19|10055246|10055761|+|2|circRNA|C3P1|ENST00000497718.5|22,23 | circC3P1(22,23) | C3P1 | LAYSMMTTQVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQATLRC | GPVVMTSMQATLR | No | Junction | Junction | 13 | 2 | CTG | TGA | TransCirc | No |
chr19|10136308|10137084|-|1|ciRNA|DNMT1|ENST00000586588.5|9 | ciDNMT1(9) | DNMT1 | LLHPRGPLAQEVPSLPPKALRATVPSLYPIPQLQPVGPVSCGSRWAEGKEGRALGLWPVNLEARAGHRHTKPGCPREGSC | GPLAQEVPSLPPKALR | No | Alternative | Junction | 16 | 3 | CTG | TGA | NA | No |
chr19|10136308|10137084|-|1|ciRNA|DNMT1|ENST00000586588.5|9 | ciDNMT1(9) | DNMT1 | LLHPRGPLAQEVPSLPPKALRATVPSLYPIPQLQPVGPVSCGSRWAEGKEGRALGLWPVNLEARAGHRHTKPGCPREGSC | LLHPRGPLAQEVPSLPPK | No | Alternative | Junction | 18 | 3 | CTG | TGA | NA | No |
chr19|10143765|10149968|-|5|circRNA|DNMT1|ENST00000592705.5|29,28,27,26,25 | circDNMT1(29,28,27,26,25) | DNMT1 | MRTCTQSTTGNTPTTSKAATWMPLSPTELAGSKRSSVPRRATAGPMRLTSKSGSTSSTD | ATAGPMR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
Page 1 of 1
bottom of page