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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|8244057|8253414|+|5|circRNA|PTPRM|ENST00000580170.5|15,16,17,18,19 | circPTPRM(15,16,17,18,19) | PTPRM | MKPTQWPAIPAAWCSPILTRSESRPTCPIRLGSSTPPSGWQTSFSTSHR | LGSSTPPSGWQTSFSTSHR | No | Alternative | Alternative | 19 | 1 | ATG | TGA | NA | No |
chr18|8777832|8798291|+|5|circRNA|MTCL1|ENST00000306329.15|4,5,6,7,8 | circMTCL1(4,5,6,7,8) | MTCL1 | LWLSSGGALPTLPGADWRSQLAAADRGQGTAPQTEFPKKKKHSGNVQGEENL | GQGTAPQTEFPK | No | Junction | Junction | 12 | 3 | CTG | TAA | TransCirc | No |
chr18|8783529|8786091|+|2|circRNA|MTCL1|ENST00000306329.15|5,6 | circMTCL1(5,6) | MTCL1 | MPRVMRARRRVMGRRAACPSPSGKGLLAGRVTRRKCLRRRRASGAGSHRRPASHAPRSS | ASGAGSHR | No | Alternative | Alternative | 8 | 2 | ATG | TGA | NA | No |
chr18|8783529|8786091|+|2|circRNA|MTCL1|ENST00000306329.15|5,6 | circMTCL1(5,6) | MTCL1 | MPRVMRARRRVMGRRAACPSPSGKGLLAGRVTRRKCLRRRRASGAGSHRRPASHAPRSS | ASGAGSHRRPASHAPR | No | Alternative | Alternative | 16 | 2 | ATG | TGA | NA | No |
chr18|8824698|8826232|+|1|circRNA|MTCL1|ENST00000306329.15|13 | circMTCL1(13) | MTCL1 | LGLHTQQGPQWWGAGPLGRQDRGGAGRARGQHRAFPRLLLVPNHKCHHDHGHHDQPRALPEAATAEPRPHRAVGVARVTQPACRAQGRQHHGGRW | AVGVARVTQPACR | No | Alternative | Alternative | 13 | 1 | CTG | TGA | TransCirc | No |
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