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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|76370527|76380303|-|3|circRNA|ZNF516|NM_014643|6,5,4 | circZNF516(6,5,4) | ZNF516 | MVTKASEAIWFSFPGADARAPRLPSVAKNASLCSLLGSPALRCQGGCRGPKVALLPWEWSQKPLACLRIRRAIPEVPALCGRPALTGIDRPNLVTARSHMARPHRGPWPSPGRRLAPNRCLPRVAGASAGAPPLRPPSSPGLARSPRPIASLWRSLGSPQRGLALPPQISTVPRTP | GLALPPQISTVPR | No | Alternative | Alternative | 13 | 3 | ATG | TGA | TransCirc | No |
chr18|76370527|76380303|-|3|circRNA|ZNF516|NM_014643|6,5,4 | circZNF516(6,5,4) | ZNF516 | MVTKASEAIWFSFPGADARAPRLPSVAKNASLCSLLGSPALRCQGGCRGPKVALLPWEWSQKPLACLRIRRAIPEVPALCGRPALTGIDRPNLVTARSHMARPHRGPWPSPGRRLAPNRCLPRVAGASAGAPPLRPPSSPGLARSPRPIASLWRSLGSPQRGLALPPQISTVPRTP | LAPNRCLPR | No | Alternative | Alternative | 9 | 3 | ATG | TGA | TransCirc | No |
chr18|76441244|76443211|-|1|circRNA|ZNF516|NM_014643|3 | circZNF516(3) | ZNF516 | MHQPRRGPRGSARAGLGTPRPPATSIPARPRAPTAGPQPPPARASPPSASSAARSSAPIIRWCCTHACIAARAARGTVTGTGRRGPAADHSVRVTRPPSPAALAPPVPLLTPRALAWPTRLPKTVVRRAPLNLHQVLAASCCAPHVEGAPPGSRHVFWLF | ALAWPTR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
chr18|76441244|76443211|-|1|circRNA|ZNF516|NM_014643|3 | circZNF516(3) | ZNF516 | MHQPRRGPRGSARAGLGTPRPPATSIPARPRAPTAGPQPPPARASPPSASSAARSSAPIIRWCCTHACIAARAARGTVTGTGRRGPAADHSVRVTRPPSPAALAPPVPLLTPRALAWPTRLPKTVVRRAPLNLHQVLAASCCAPHVEGAPPGSRHVFWLF | APTAGPQPPPAR | No | Alternative | Junction | 12 | 3 | ATG | TGA | TransCirc | No |
chr18|76441244|76443211|-|1|circRNA|ZNF516|NM_014643|3 | circZNF516(3) | ZNF516 | MHQPRRGPRGSARAGLGTPRPPATSIPARPRAPTAGPQPPPARASPPSASSAARSSAPIIRWCCTHACIAARAARGTVTGTGRRGPAADHSVRVTRPPSPAALAPPVPLLTPRALAWPTRLPKTVVRRAPLNLHQVLAASCCAPHVEGAPPGSRHVFWLF | APTAGPQPPPARASPPSASSAAR | No | Alternative | Junction | 23 | 3 | ATG | TGA | TransCirc | No |
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