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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|69946733|69947433|-|2|circRNA|CD226|ENST00000280200.8|3,2 | circCD226(3,2) | CD226 | LAYISSLCREHVSRMCVSINGHLNTGGVVQDRDPAGFHSHFQPYSWHGHKEALC | DPAGFHSHFQPYSWHGHK | No | Alternative | Alternative | 18 | 2 | TTG | TGA | TransCirc | No |
chr18|69946733|69947433|-|2|circRNA|CD226|ENST00000280200.8|3,2 | circCD226(3,2) | CD226 | LAYISSLCREHVSRMCVSINGHLNTGGVVQDRDPAGFHSHFQPYSWHGHKEALC | EHVSRMCVSINGHLNTGGVVQDR | No | Alternative | Alternative | 23 | 2 | TTG | TGA | TransCirc | No |
chr18|70017406|70048188|-|7|circRNA|RTTN|ENST00000255674.10|46,45,44,43,42,41,40 | circRTTN(46,45,44,43,42,41,40) | RTTN | MFASVLQINPRSWLMICSAHVQACLPRVLPCILPACNSFLFS | MFASVLQINPRSWLMICSAHVQACLPR | No | Junction | Junction | 27 | 2 | ATG | TGA | TransCirc | No |
chr18|70047970|70109717|-|13|circRNA|RTTN|ENST00000255674.10|40,39,38,37,36,35,34,33,32,31,30,29,28 | circRTTN(40,39,38,37,36,35,34,33,32,31,30,29,28) | RTTN | MFCTCAGLSATCPALYTASLQFLSVLLTEEAKGHLQAKSKTHLCCSPTVASLLDDSQENQKSLEQLSDVILQEMLGTSLRFSNAAGSETAPVSESDGCASFLWPAVP | MLGTSLR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
chr18|70047970|70109717|-|13|circRNA|RTTN|ENST00000255674.10|40,39,38,37,36,35,34,33,32,31,30,29,28 | circRTTN(40,39,38,37,36,35,34,33,32,31,30,29,28) | RTTN | MRLISMACRPLSGPYEGWLTSLRFRDGAHTLLSQSL | LISMACRPLSGPYEGWLTSLR | No | Alternative | Alternative | 21 | 2 | ATG | TAG | NA | No |
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