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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|46088108|46095131|-|5|circRNA|ATP5A1|ENST00000398752.10|6,5,4,3,2 | circATP5A1(6,5,4,3,2) | ATP5A1 | LLLTQSLTRNVSMMDLMKRRSCTVFMLLLVKRDPLLPSW | NVSMMDLMKR | No | Alternative | Alternative | 10 | 3 | TTG | TGA | TransCirc | No |
chr18|46122466|46124893|+|3|circRNA|HAUS1|ENST00000282058.10|5,6,7 | circHAUS1(5,6,7) | HAUS1 | LARLKQQTIPLKKKLESYLDLMPGCQESRVASVYRKGQS | KLESYLDLMPGCQESR | No | Junction | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
chr18|46836356|46846841|-|4|circRNA|PIAS2|ENST00000585916.5|9,8,7,6 | circPIAS2(9,8,7,6) | PIAS2 | MRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGAMHHRLKMGLNRSALDAP | AAYESLILDGAMHHR | No | Junction | Junction | 15 | 1 | ATG | TGA | TransCirc | No |
chr18|46836356|46846841|-|4|circRNA|PIAS2|ENST00000585916.5|9,8,7,6 | circPIAS2(9,8,7,6) | PIAS2 | MRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGAMHHRLKMGLNRSALDAP | AAYESLILDGAMHHRLK | No | Junction | Junction | 17 | 1 | ATG | TGA | TransCirc | No |
chr18|46836356|46846841|-|4|circRNA|PIAS2|ENST00000585916.5|9,8,7,6 | circPIAS2(9,8,7,6) | PIAS2 | MRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGAMHHRLKMGLNRSALDAP | KAAYESLILDGAMHHR | No | Junction | Junction | 16 | 1 | ATG | TGA | TransCirc | No |
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