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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|82251528|82252433|-|1|ciRNA|CSNK1D|ENST00000398519.9|5 | ciCSNK1D(5) | CSNK1D | LFILTYLPSAHQRGEYLEALERWQARQARASGPQVAGKGWTGSGGASLCSGCPLWPPPGAREISFAFVGLPQDTHLK | GEYLEALER | No | Alternative | Alternative | 9 | 2 | CTG | TGA | NA | No |
chr17|82251528|82252433|-|1|ciRNA|CSNK1D|ENST00000398519.9|5 | ciCSNK1D(5) | CSNK1D | LLTGVAYVSGVPRRLSLGFVRRVAHLPKGWWQESGALLCMEVTACPPVHLDLLAKCPSAWGVLGGPGEMAGKAGPSLRAPSGWKGMDRQWWGLSLQWLPSLAPSRSSGDFLCICRIAPGYTPQMKLNCAL | LLTGVAYVSGVPRR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | NA | No |
chr17|8238030|8238629|-|2|circRNA|CTC1|ENST00000315684.12|4,3 | circCTC1(4,3) | CTC1 | LAPSRLSLSSTQRVLPACSGSASSQYRTSRLTSVSHAAATCRGAVVHTRPGPKRLDQMGTPCPESSCYF | TSRLTSVSHAAATCR | No | Alternative | Junction | 15 | 2 | CTG | TAG | TransCirc | No |
chr17|8238030|8238629|-|2|circRNA|CTC1|ENST00000315684.12|4,3 | circCTC1(4,3) | CTC1 | LGPRGWTKWEPPAPRAAVTFRDTNRPIGRLGTRVQERKPLCER | WEPPAPR | No | Alternative | Alternative | 7 | 3 | CTG | TAA | TransCirc | No |
chr17|8238030|8238629|-|2|circRNA|CTC1|ENST00000315684.12|4,3 | circCTC1(4,3) | CTC1 | LVGPSFSVPPLELPPSCQVEFLRGRALGAVGCPCASVSFDHQSWPRHAYPCPLPRECFLPAQAQLRLSTGPQDSPASPMLQPPVVEQ | GRALGAVGCPCASVSFDHQSWPR | No | Alternative | Junction | 23 | 3 | TTG | TAG | TransCirc | No |
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