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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|67853939|67875744|+|4|circRNA|BPTF|ENST00000544778.6|2,3,4,5 | circBPTF(2,3,4,5) | BPTF | LGIKVTLCQQILATTQQMQLQKRLVPLKGGALWGVSQKPPIAATWQRRRWHLSSPRMCQVGENQEYIGLVLLYWKKKTSRPLNFPSPLRI | MCQVGENQEYIGLVLLYWK | No | Junction | Junction | 19 | 1 | TTG | TAA | TransCirc | No |
chr17|67874816|67894165|+|5|circRNA|BPTF|ENST00000544778.6|4,5,6,7,8 | circBPTF(4,5,6,7,8) | BPTF | MCSKPREFALALAILECAVKPVVMLPIWRESLGHTRRNFGIHKSQKGRH | ESLGHTRR | No | Alternative | Junction | 8 | 2 | ATG | TGA | TransCirc | No |
chr17|67886127|67894165|+|4|circRNA|BPTF|ENST00000321892.8|6,7,8,9 | circBPTF(6,7,8,9) | BPTF | MARIFRTYQKNLTRHVRAVTLVLPLPPSSLIWKTVTAAVN | AVTLVLPLPPSSLIWK | No | Alternative | Junction | 16 | 1 | ATG | TAA | TransCirc | No |
chr17|67928354|67975958|+|12|circRNA|BPTF|ENST00000321892.8|18,19,20,21,22,23,24,25,26,27,28,29 | circBPTF(18,19,20,21,22,23,24,25,26,27,28,29) | BPTF | MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKASRNDWSSRSRQ | ASRNDWSSR | No | Junction | Junction | 9 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr17|67944149|67964404|+|6|circRNA|BPTF|ENST00000321892.8|22,23,24,25,26,27 | circBPTF(22,23,24,25,26,27) | BPTF | LAVIGVRIGTMGAALASCKVRQSSLMSMSVHSASQQRMP | LAVIGVR | No | Alternative | Alternative | 7 | 3 | TTG | TGA | riboCIRC | No |
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