top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|57257097|57616084|+|8|circRNA|MSI2|ENST00000416426.6|2,3,4,5,6,7,8,9 | circMSI2(2,3,4,5,6,7,8,9) | MSI2 | MFPPGTRGRARGLPYTMDAFMLGMGMLVKCLSVD | GLPYTMDAFMLGMGMLVK | No | Junction | Junction | 18 | 1 | ATG | TGA | TransCirc | No |
chr17|58005973|58006342|-|1|ciRNA|SRSF1|NM_001078166|2 | ciSRSF1(2) | SRSF1 | LVVWIDVKGRKLPKIFLLRDRFNNCKFFMLGLKLL | FFMLGLK | No | Alternative | Alternative | 7 | 1 | CTG | TAG | NA | No |
chr17|58357467|58358823|-|1|circRNA|RNF43|NM_001305545|8 | circRNF43(8) | RNF43 | LGRGLLNGVLTPQRAGHALIRTARCCRPSLREIHFPSPWDPLDLTKNQVEDSTSFASIPAMPTTTSLLPTCWALPGVQWLGPHDLVPSCHPRSQAWALGITASPELHIPGLQESSSAWQEPSTPMHKAGD | AGHALIR | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
chr17|58505471|58506871|-|2|circRNA|MTMR4|ENST00000579925.5|11,10 | circMTMR4(11,10) | MTMR4 | MGMANIHAIRNSFQYLRAVCSQMPDPSKFFSDCVLWSGEHSSSSKAADPGCAILHGSSGQPGQGWRL | AADPGCAILHGSSGQPGQGWR | No | Alternative | Junction | 21 | 3 | ATG | TGA | TransCirc | No |
chr17|58696692|58709990|+|3|circRNA|RAD51C|ENST00000583539.5|3,4,5 | circRAD51C(3,4,5) | RAD51C | LSLRTRLLNGLAQQMISLANNHRLAYAVGSRCADTRMFWRSGR | LAYAVGSR | No | Junction | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page