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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|28720030|28720682|+|1|ciRNA|RPL23A|ENST00000422514.6|1 | ciRPL23A(1) | RPL23A | LGGGNAAGIIRQGGPDIRFWEATCIHWLELHVPGPVRN | LGGGNAAGIIRQGGPDIR | No | Alternative | Alternative | 18 | 2 | TTG | TAG | NA | No |
chr17|28720030|28720682|+|1|ciRNA|RPL23A|ENST00000422514.6|1 | ciRPL23A(1) | RPL23A | LGSYMHPLVGAPCPRACKELVPSALTIFLLVHVQPGYITRPSLRSVVLRWGMCKIRRTFSGKYQAFIQCYFVS | LGSYMHPLVGAPCPR | No | Alternative | Alternative | 15 | 1 | CTG | TAG | NA | No |
chr17|28720030|28720682|+|1|ciRNA|RPL23A|ENST00000422514.6|1 | ciRPL23A(1) | RPL23A | LQYTWAAWAQPRGLSSGRGSWGGATRQASSAREGQTFGSGKLHASTGWSSMSPGL | GLSSGRGSWGGATR | No | Alternative | Alternative | 14 | 1 | CTG | TAA | NA | No |
chr17|28720030|28720682|+|1|ciRNA|RPL23A|ENST00000422514.6|1 | ciRPL23A(1) | RPL23A | LQYTWAAWAQPRGLSSGRGSWGGATRQASSAREGQTFGSGKLHASTGWSSMSPGL | GSWGGATRQASSAR | No | Alternative | Alternative | 14 | 1 | CTG | TAA | NA | No |
chr17|28912481|28913277|-|1|circRNA|PHF12|ENST00000332830.8|9 | circPHF12(9) | PHF12 | LAPAPHATSGWGPSEPHRRHHCEDRECHWPQLLPPEEFGSCPKPAPFHSQLLCQHREHQHFAKKDCPITDRTSVDRFKATGLTPKRHPGAHSPASSRRWYLGHNSQPTIQLTSAIVSGSVVLLRSSAAY | ATGLTPK | No | Alternative | Junction | 7 | 3 | CTG | TGA | TransCirc | No |
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