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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|21017941|21021226|-|3|circRNA|USP22|ENST00000261497.8|5,4,3 | circUSP22(5,4,3) | USP22 | LRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHRCEMQSPSSCLVCEMSSLFQEPLI | HRCEMQSPSSCLVCEMSSLFQEPLI | No | Junction | Junction | 25 | 3 | CTG | TGA | TransCirc | No |
chr17|247110|333934|-|5|circRNA|RPH3AL|NM_001190412|6,5,4,3,2 | circRPH3AL(6,5,4,3,2).A | RPH3AL | LEIRRLGYQDTAASSRICVVDTCTCTLETASMRPAADSFEWL | LGYQDTAASSR | No | Alternative | Alternative | 11 | 2 | TTG | TGA | NA | No |
chr17|2697895|2702057|-|7|circRNA|CLUH|ENST00000435359.5|10,9,8,7,6,5,4 | circCLUH(10,9,8,7,6,5,4) | CLUH | LEQHLLQPGLRRPRPLQGLRGGRGGLRGAHQRPEWRPHVQRGGRGGAVHAGHGGGGLPRLPGHGPVHHPRHPGAGPGAERHLRLHRLRQDRGVTPAVPGAAGAHESAPQDPAAPGAQRP | GAHQRPEWRPHVQRGGR | No | Alternative | Alternative | 17 | 3 | CTG | TGA | TransCirc | No |
chr17|2697895|2702057|-|7|circRNA|CLUH|ENST00000435359.5|10,9,8,7,6,5,4 | circCLUH(10,9,8,7,6,5,4) | CLUH | LEQHLLQPGLRRPRPLQGLRGGRGGLRGAHQRPEWRPHVQRGGRGGAVHAGHGGGGLPRLPGHGPVHHPRHPGAGPGAERHLRLHRLRQDRGVTPAVPGAAGAHESAPQDPAAPGAQRP | GGAVHAGHGGGGLPR | No | Alternative | Alternative | 15 | 3 | CTG | TGA | TransCirc | No |
chr17|2697895|2702057|-|7|circRNA|CLUH|ENST00000435359.5|10,9,8,7,6,5,4 | circCLUH(10,9,8,7,6,5,4) | CLUH | LEQHLLQPGLRRPRPLQGLRGGRGGLRGAHQRPEWRPHVQRGGRGGAVHAGHGGGGLPRLPGHGPVHHPRHPGAGPGAERHLRLHRLRQDRGVTPAVPGAAGAHESAPQDPAAPGAQRP | GGRGGAVHAGHGGGGLPR | No | Alternative | Alternative | 18 | 3 | CTG | TGA | TransCirc | No |
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