top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|18872582|18882683|+|3|circRNA|PRPSAP2|ENST00000432893.6|4,5,6 | circPRPSAP2(4,5,6).A | PRPSAP2 | MDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEKQEYKFKSL | EIQGFFNIPVDNLRASPFLLQYIQEEK | No | Junction | Junction | 27 | 3 | ATG | TGA | TransCirc | No |
chr17|19309884|19329647|+|5|circRNA|EPN2|ENST00000314728.9|5,6,7,8,9 | circEPN2(5,6,7,8,9) | EPN2 | MVQLKMTFLNLTTFGLQKKQPPPRECPPSWSKPGPRLVEKRSFSCSWHLP | ECPPSWSKPGPR | No | Alternative | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr17|19816748|19826186|-|3|circRNA|ULK2|NM_001142610|13,12,11 | circULK2(13,12,11) | ULK2 | LPVLVARTLLVTRMTLFWCHTTSRQTTHKHFLAILFLSKVQ | MTLFWCHTTSRQTTHK | No | Junction | Junction | 16 | 2 | CTG | TAA | TransCirc | No |
chr17|19958013|19958567|-|1|circRNA|AKAP10|ENST00000582611.5|4 | circAKAP10(4) | AKAP10 | LDYQTQETKSSLSKTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQSSLAEPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKNLVWTTRLKRPNQAFLRPLNKSCTTLLSSLTSFNSWNFGEWSIW | NLVWTTR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr17|20204332|20205912|+|1|circRNA|SPECC1|NM_001243439|4 | circSPECC1(4) | SPECC1 | LEIRCPVTLMSIKKTYMEMHYGHQAPQVAMLPKLLCRQMLPTLSTLQQRHPQGPCPPPVTPLRVQSVLLLGVPQTA | KTYMEMHYGHQAPQVAMLPK | No | Alternative | Alternative | 20 | 1 | CTG | TAA | riboCIRC | No |
Page 1 of 1
bottom of page