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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|88726714|88727192|-|2|circRNA|PIEZO1|NM_001142864|25,24 | circPIEZO1(25,24) | PIEZO1 | LSRGPPASASSGWATCWPASTCCSSARPCCRGTHGPASCCGTASFCTTSPSSSPRTCCRRLSPAAVRLPAVAGVLS | RLSPAAVR | No | Alternative | Junction | 8 | 3 | TTG | TGA | NA | No |
chr16|8905186|8910827|-|4|circRNA|USP7|NM_001286457|14,13,12,11 | circUSP7(14,13,12,11) | USP7 | LMTTWCQGVLKRKQLSTIMGVTMTTCLFDTALMLTC | KQLSTIMGVTMTTCLFDTALMLTC | No | Alternative | Alternative | 24 | 2 | TTG | TAG | TransCirc | No |
chr16|89102603|89133262|+|5|circRNA|ACSF3|ENST00000317447.8|4,5,6,7,8 | circACSF3(4,5,6,7,8) | ACSF3 | LLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDRAGPQVGMDQRRRDPPRAPAAPRPWCGQRAALSSLGGSHLCDDA | AGPQVGMDQR | No | Alternative | Junction | 10 | 1 | CTG | TGA | TransCirc | No |
chr16|89102603|89133262|+|5|circRNA|ACSF3|ENST00000317447.8|4,5,6,7,8 | circACSF3(4,5,6,7,8) | ACSF3 | LLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDRAGPQVGMDQRRRDPPRAPAAPRPWCGQRAALSSLGGSHLCDDA | AGPQVGMDQRR | No | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | No |
chr16|89102603|89133262|+|5|circRNA|ACSF3|ENST00000317447.8|4,5,6,7,8 | circACSF3(4,5,6,7,8) | ACSF3 | LLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDRAGPQVGMDQRRRDPPRAPAAPRPWCGQRAALSSLGGSHLCDDA | TGDRAGPQVGMDQR | No | Junction | Junction | 14 | 1 | CTG | TGA | TransCirc | No |
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