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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|8635167|8644725|+|6|circRNA|METTL22|NM_024109|5,6,7,8,9,10 | circMETTL22(5,6,7,8,9,10) | METTL22 | LPARAGAARRWQAALRGGARGGLLPTAPGLRAPPATGVAGRPAPGRLHPVPTGPLPRMYSAGARGRHGAR | LPARAGAAR | No | Alternative | Junction | 9 | 1 | CTG | TAG | NA | No |
chr16|86546558|86552292|-|3|circRNA|MTHFSD|NM_001159378|5,4,3 | circMTHFSD(5,4,3).A | MTHFSD | LDSRVLVDLVVVGSVAVSEKGRFSCCRATPTLAGVQNGQDH | VLVDLVVVGSVAVSEKGR | No | Junction | Junction | 18 | 1 | TTG | TAA | NA | No |
chr16|87407677|87410335|-|1|circRNA|ZCCHC14|ENST00000568020.5|13 | circZCCHC14(13) | ZCCHC14 | MSSDTVTAVFPAAKASAELPVVLNVHGRRVTSPGRPSEVENRQL | ASAELPVVLNVHGR | No | Alternative | Alternative | 14 | 1 | ATG | TAA | NA | No |
chr16|87417459|87418901|-|2|circRNA|ZCCHC14|NM_015144|8,7 | circZCCHC14(8,7) | ZCCHC14 | LCVEWLVSRPRRAEPSTTGSTRPAPPPPCLTAPMRAARAQPWPTGPRWTHHLPSSCLPVCRPLRPRSRMGF | AQPWPTGPR | No | Alternative | Alternative | 9 | 3 | CTG | TAG | TransCirc | No |
chr16|87644257|87645035|+|1|circRNA|JPH3|ENST00000537256.5|2 | circJPH3(2) | JPH3 | MRQGYGVRQSVPYGMAAVIRSPLRTSINSLRSEHTNGTALHPDASPAVAGSPAVSRGGFVLVAHSDSEILKSKKKGLFRRSLLSGLKLRKSESKSSLASQRSKQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVIEDDIDATTTETYVGEWKNDKRSGFGVSQRSDGLKYEGEWASNRRHGYGCMTFPDGTKEEGKYKQNILVGGKRKNLIPLRASKIREKVDRAVEAAERAATIAKQKAEIAASRDLPGPVGRWHAPGLRRPAERPVWHGRGHPLTPEDVHQLPAQRAHQRHGAASRRLSGGGRQPGRVPRGLRARGPQ | HGAASRR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
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