top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|80620762|80633236|-|2|circRNA|CDYL2|ENST00000570137.6|4,3 | circCDYL2(4,3) | CDYL2 | LQRSHRRQQTAAPQRSGERVLQRPGLFLPNWPVVQRPAKGEHSDCRSHQALL | QQTAAPQR | No | Alternative | Junction | 8 | 3 | CTG | TGA | TransCirc | No |
chr16|84067666|84070776|-|4|circRNA|MBTPS1|NM_003791|16,15,14,13 | circMBTPS1(16,15,14,13) | MBTPS1 | LLMVDSEEEYFPEEIAKLRRDVDNGLSLVIFSDWYNTSVMRKVKFYDENTSLTGSPICHRTETTLKLPSPTPRSYGLGRATWPSPFL | FYDENTSLTGSPICHRTETTLK | No | Junction | Junction | 22 | 3 | TTG | TGA | TransCirc | No |
chr16|84318271|84326955|+|4|circRNA|WFDC1|ENST00000219454.9|3,4,5,6 | circWFDC1(3,4,5,6) | WFDC1 | MWQNLEGDNRSTFSKATASSLRLAGAAETSMAWWQWLAPGWP | LAGAAETSMAWWQWLAPGWP | No | Alternative | Junction | 20 | 1 | ATG | TGA | TransCirc | No |
chr16|84656870|84657944|+|1|circRNA|KLHL36|NM_024731|3 | circKLHL36(3) | KLHL36 | LLPGRQERAVGQRDAAARPAEPPLCRGAGGLHLHRRRQLLTGQRRGCGLQSSL | QLLTGQRR | No | Alternative | Alternative | 8 | 3 | CTG | TAG | TransCirc | No |
chr16|84716258|84719435|+|1|ciRNA|USP10|ENST00000562092.1|2 | ciUSP10(2) | USP10 | LLKHFKLLFNVLFMSLVLNKCRFSLVTSCLVTVSHSVSIC | CRFSLVTSCLVTVSHSVSIC | No | Alternative | Alternative | 20 | 3 | TTG | TAG | NA | No |
Page 1 of 1
bottom of page