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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|71655239|71656681|-|2|circRNA|PHLPP2|ENST00000568004.5|12,11 | circPHLPP2(12,11) | PHLPP2 | LLWIALQRGWELCMACLMETEMRSSRACCSVRWQMCF | GWELCMACLMETEMRSSR | No | Alternative | Alternative | 18 | 3 | TTG | TAG | TransCirc | No |
chr16|71676446|71714801|-|8|circRNA|PHLPP2|ENST00000568954.5|9,8,7,6,5,4,3,2 | circPHLPP2(9,8,7,6,5,4,3,2) | PHLPP2 | MNHLKTMVIENLEGNKHITHVDLRDNRLTDLDLSSLCSLEQLHCGRNQLRELTLSGFSLRTLYASSNKKYETQWEQKLFE | ELTLSGFSLRTLYASSNK | No | Junction | Junction | 18 | 2 | ATG | TAG | TransCirc | No |
chr16|71690709|71702597|-|1|ciRNA|PHLPP2|ENST00000568954.5|3 | ciPHLPP2(3) | PHLPP2 | LPEDPTSLRSGALPSSMQMNLKTWGLRSSSSQMAAGSVTSPVVALWTSGGPCSCEGFHCAAPS | TWGLRSSSSQMAAGSVTSPVVALWTSGGPCSCEGFHCAAPS | No | Alternative | Alternative | 41 | 1 | TTG | TAA | NA | No |
chr16|71916461|71921453|+|4|circRNA|IST1|ENST00000544564.5|5,6,7,8 | circIST1(5,6,7,8) | IST1 | MHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMRNWPRKQGRRLLTIWLLGKMNELGSVWSTLSGKTTSWRPWRSWSCTVTCCWLGLALSSL | MNELGSVWSTLSGK | No | Alternative | Junction | 14 | 1 | ATG | TGA | TransCirc | No |
chr16|71916461|71921453|+|4|circRNA|IST1|ENST00000544564.5|5,6,7,8 | circIST1(5,6,7,8) | IST1 | MHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMRNWPRKQGRRLLTIWLLGKMNELGSVWSTLSGKTTSWRPWRSWSCTVTCCWLGLALSSL | MNELGSVWSTLSGKTTSWRPWR | No | Alternative | Junction | 22 | 1 | ATG | TGA | TransCirc | No |
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