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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|50749548|50754424|+|3|circRNA|CYLD|ENST00000564326.5|2,3,4 | circCYLD(2,3,4) | CYLD | LATGMEDLMECSFVVLRVLKVQFYCTSMISSQAF | VQFYCTSMISSQAF | No | Junction | Junction | 14 | 2 | TTG | TGA | TransCirc | No |
chr16|53285595|53308854|+|10|circRNA|CHD9|ENST00000447540.5|25,26,27,28,29,30,31,32,33,34 | circCHD9(25,26,27,28,29,30,31,32,33,34) | CHD9 | LLRKDHLMVKTVLWGSSSTSLGFESFKVHQRPASSISQNPYQYQ | TVLWGSSSTSLGFESFK | No | Alternative | Alternative | 17 | 2 | TTG | TGA | NA | No |
chr16|53303719|53306397|+|2|circRNA|CHD9|ENST00000447540.5|31,32 | circCHD9(31,32) | CHD9 | MGHQSLLISYKVDICWQPRIGQRIGGSKYFYPAHHRRTCF | IGGSKYFYPAHHR | No | Alternative | Junction | 13 | 1 | ATG | TAG | TransCirc | No |
chr16|53307680|53315044|+|4|circRNA|CHD9|ENST00000447540.5|33,34,35,36 | circCHD9(33,34,35,36) | CHD9 | LIQKVQFQLLILKMERDLQEMMHQRERIWKNGLRSTRVMWKIWELLFLIV | DLQEMMHQRER | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr16|53307680|53315044|+|4|circRNA|CHD9|ENST00000447540.5|33,34,35,36 | circCHD9(33,34,35,36) | CHD9 | LIQKVQFQLLILKMERDLQEMMHQRERIWKNGLRSTRVMWKIWELLFLIV | MERDLQEMMHQR | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
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