top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|27528597|27545523|-|5|circRNA|GTF3C1|ENST00000561623.5|6,5,4,3,2 | circGTF3C1(6,5,4,3,2) | GTF3C1 | LCERTFKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKTKKGMKKLIWKLEFWSLGGTRWLWRMSTPFI | LIWKLEFWSLGGTR | No | Alternative | Junction | 14 | 1 | CTG | TGA | TransCirc | No |
chr16|27749583|27750306|+|1|circRNA|KIAA0556|NM_015202|16 | circKIAA0556(16) | KIAA0556 | LKEKSPRPLEPWREKTPGLPGRRHGQGGAVSRSTHFTSHGAPSVPSTAPTGDASPTRSSRGTSWMSSCSKRAAGTATCPPPRRGSSQGCREGRMATLERQTLGVTLKSPSCLMDSAWSLTSSLPGGTDTMSASTE | RHGQGGAVSR | No | Alternative | Junction | 10 | 1 | TTG | TAG | TransCirc | No |
chr16|28724321|28725012|+|3|circRNA|EIF3C|ENST00000566501.5|11,12,13 | circEIF3C(11,12,13) | EIF3C | LRVRGCILTLVERMDEEFTKIMQNTDPHSQVLPRLSCCNCWFRLQRKTTWERASLSRSSSISSPLSMTTTPTWQPT | IMQNTDPHSQVLPR | No | Junction | Junction | 14 | 1 | CTG | TGA | NA | No |
chr16|28894154|28900916|+|6|circRNA|ATP2A1|ENST00000357084.7|10,11,12,13,14,15 | circATP2A1(10,11,12,13,14,15) | ATP2A1 | LGTTRAQPLPSAGELASLGRTRRWPIAPTRAESSTTCPWLNSGKPADVPAASPVWSPRTSPRLWSTCSPTMRSQP | AQPLPSAGELASLGR | No | Alternative | Alternative | 15 | 2 | CTG | TGA | TransCirc | No |
chr16|28897999|28898451|+|2|circRNA|ATP2A1|ENST00000357084.7|13,14 | circATP2A1(13,14) | ATP2A1 | LAGTPCAAWPWPPGTPPRSERKWSWMTLPGSWSMR | LAGTPCAAWPWPPGTPPR | No | Alternative | Alternative | 18 | 2 | CTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page