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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|45955248|45958619|-|2|circRNA|FYCO1|ENST00000535325.5|14,13 | circFYCO1(14,13) | FYCO1 | LCLISSQMRNCARYRSPAPLCLKHPLKLILSTQMRLNRYVAASSVTTAATTTS | SPAPLCLKHPLK | No | Alternative | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
chr3|45955248|45962392|-|4|circRNA|FYCO1|ENST00000535325.5|14,13,12,11 | circFYCO1(14,13,12,11) | FYCO1 | LCLISSQMRNCARYRSPAPLCLKHPLKLILSTQMRLNRPRRNSKKPQQKSKSITTNSARR | LILSTQMRLNRPR | No | Junction | Junction | 13 | 1 | CTG | TGA | TransCirc | No |
chr3|45955248|45962392|-|4|circRNA|FYCO1|ENST00000535325.5|14,13,12,11 | circFYCO1(14,13,12,11) | FYCO1 | LCLISSQMRNCARYRSPAPLCLKHPLKLILSTQMRLNRPRRNSKKPQQKSKSITTNSARR | SITTNSAR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr3|45955248|45962392|-|4|circRNA|FYCO1|ENST00000535325.5|14,13,12,11 | circFYCO1(14,13,12,11) | FYCO1 | LCLISSQMRNCARYRSPAPLCLKHPLKLILSTQMRLNRPRRNSKKPQQKSKSITTNSARR | SITTNSARR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr3|45964335|45965125|-|2|circRNA|FYCO1|ENST00000535325.5|10,9 | circFYCO1(10,9) | FYCO1 | MGEKLSCTSNHLAECQAAMLRKDKEGAALREDLERMLVKSARASGASLRSKAGSCRLLRKLWRS | ASGASLR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
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