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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|20125904|20137052|+|3|circRNA|KAT2B|ENST00000263754.4|10,11,12 | circKAT2B(10,11,12) | KAT2B | MQMNMQLDTLRNRPIFCQHTRPGMRRQGWKSAGV | NRPIFCQHTRPGMRR | No | Junction | Junction | 15 | 2 | ATG | TAA | TransCirc | No |
chr3|24143500|24146822|-|2|circRNA|THRB|NM_000461|7,6 | circTHRB(7,6) | THRB | LSPKPMWRPTPKAATGSKNGNSWVSLEEPFRKISIHPIPVNMKENVS | NGNSWVSLEEPFR | No | Junction | Junction | 13 | 1 | CTG | TAG | TransCirc | No |
chr3|27379248|27452498|-|23|circRNA|SLC4A7|NM_001258379|24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circSLC4A7(24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | SLC4A7 | MAKTAQWKALSMNTENAKVTRSNMRVLMKKLLWILAKLAQL | SNMRVLMK | No | Junction | Junction | 8 | 2 | ATG | TGA | NA | No |
chr3|27385891|27404963|-|10|circRNA|SLC4A7|NM_001258380|22,21,20,19,18,17,16,15,14,13 | circSLC4A7(22,21,20,19,18,17,16,15,14,13) | SLC4A7 | LCANSWTCVSRRENLVGLMILCQKVRKRKKMTKRKKRKRVQ | LCANSWTCVSRR | No | Alternative | Junction | 12 | 2 | TTG | TAG | TransCirc | No |
chr3|27394517|27420787|-|11|circRNA|SLC4A7|NM_001258380|19,18,17,16,15,14,13,12,11,10,9 | circSLC4A7(19,18,17,16,15,14,13,12,11,10,9) | SLC4A7 | LLMVGVMLGVCSVMGLPWFVAATVLSISHVNSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVLKVFVFVIGSSGQGTTVP | VFVFVIGSSGQGTTVP | No | Alternative | Junction | 16 | 1 | TTG | TGA | TransCirc | No |
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