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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|186783639|186784431|+|1|ciRNA|EIF4A2|ENST00000441007.5|2 | ciEIF4A2(2) | EIF4A2 | LEAAVSTRPRRGGDGTGPVPVNRWHRPRQAAPPASITRLAHCWGRSSALRALARRSAVETGSPCARAWGAAFPGIRRPQPLGKAHSVDIRPEAAALACAGEANVLRRVAKGYALKVQLRWPGRGV | SSALRALAR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | NA | No |
chr3|187038741|187051346|+|3|circRNA|ST6GAL1|ENST00000169298.7|3,4,5 | circST6GAL1(3,4,5) | ST6GAL1 | LRFNGAPTANFQQDVGTKTTIRLMNSQMSFDHPEKNGPWPADPINLPSHG | LMNSQMSFDHPEK | No | Junction | Junction | 13 | 3 | CTG | TAA | TransCirc | No |
chr3|188406111|188609844|+|4|circRNA|LPP|ENST00000448637.5|3,4,5,6 | circLPP(3,4,5,6) | LPP | LPLHQDKFMAQGPRAITLSQFLSLGSVHLLQHGEAWIMPTFHHQDFSRSLGMGMPPTRDAIMKATMQQGQAMGAEMTLTLPMVNKVTQIPGNGNQGTLLLEQGTRTLLGCIQSLVPRRPISQILFQPPVRHHCSQRFQQCLTHLGCHPKALVSPSAMCLHGWRPPIPLGTPAFQCLHNSHPKSLPR | SLGMGMPPTR | No | Alternative | Junction | 10 | 2 | CTG | TAG | TransCirc | No |
chr3|188406111|188609844|+|4|circRNA|LPP|ENST00000448637.5|3,4,5,6 | circLPP(3,4,5,6) | LPP | LPLHQDKFMAQGPRAITLSQFLSLGSVHLLQHGEAWIMPTFHHQDFSRSLGMGMPPTRDAIMKATMQQGQAMGAEMTLTLPMVNKVTQIPGNGNQGTLLLEQGTRTLLGCIQSLVPRRPISQILFQPPVRHHCSQRFQQCLTHLGCHPKALVSPSAMCLHGWRPPIPLGTPAFQCLHNSHPKSLPR | TLLGCIQSLVPR | No | Alternative | Junction | 12 | 2 | CTG | TAG | TransCirc | No |
chr3|188406111|188609844|+|4|circRNA|LPP|ENST00000448637.5|3,4,5,6 | circLPP(3,4,5,6) | LPP | LPLHQDKFMAQGPRAITLSQFLSLGSVHLLQHGEAWIMPTFHHQDFSRSLGMGMPPTRDAIMKATMQQGQAMGAEMTLTLPMVNKVTQIPGNGNQGTLLLEQGTRTLLGCIQSLVPRRPISQILFQPPVRHHCSQRFQQCLTHLGCHPKALVSPSAMCLHGWRPPIPLGTPAFQCLHNSHPKSLPR | VTQIPGNGNQGTLLLEQGTR | No | Alternative | Junction | 20 | 2 | CTG | TAG | TransCirc | No |
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