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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|183033990|183041750|-|3|circRNA|MCCC1|NR_120640|13,12,11 | circMCCC1(13,12,11) | MCCC1 | LNISYTRNMTLKDGKNNCSRREDSFEPGRNNSAGPCLRS | EDSFEPGR | No | Alternative | Junction | 8 | 3 | CTG | TAG | TransCirc | No |
chr3|183070998|183092545|-|5|circRNA|MCCC1|NR_120640|7,6,5,4,3 | circMCCC1(7,6,5,4,3) | MCCC1 | MRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRKKHYQGPHCKQRRNCLQGDAHSQKTGCTDCGGL | HYQGPHCKQR | No | Alternative | Junction | 10 | 1 | ATG | TAG | TransCirc | No |
chr3|183756527|183777700|+|8|circRNA|YEATS2|ENST00000305135.9|12,13,14,15,16,17,18,19 | circYEATS2(12,13,14,15,16,17,18,19) | YEATS2 | LASHHPRLLENNSPLGQWSKEHWESAHLLHKDNKR | LLENNSPLGQWSK | No | Alternative | Alternative | 13 | 2 | TTG | TAA | riboCIRC | No |
chr3|183942726|183947510|-|3|circRNA|ABCC5|ENST00000334444.10|25,24,23 | circABCC5(25,24,23) | ABCC5 | LSLEAPARIKNKAPSPDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSDTRSCWMTTKLLFFCLRVRCGGWLCGWTSSASPSSPPRG | LLFFCLRVR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr3|18415110|18420991|-|4|circRNA|SATB1|ENST00000338745.10|5,4,3,2 | circSATB1(5,4,3,2) | SATB1 | LPQTRRLASRTMVAHHSEECSEGLTERYESEFIGQGVPPFTGDL | TMVAHHSEECSEGLTERYESEFIGQGVPPFTGDL | Yes | Junction | Junction | 34 | 1 | TTG | TAG | riboCIRC,TransCirc | No |
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