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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|136443286|136502779|-|8|circRNA|STAG1|ENST00000383202.6|15,14,13,12,11,10,9,8 | circSTAG1(15,14,13,12,11,10,9,8) | STAG1 | MGELSRTVERLGMYDRVAIRRTCSRRGSHEAHDCSGECCLKPQYSSG | TVERLGMYDR | No | Alternative | Junction | 10 | 3 | ATG | TAA | TransCirc | No |
chr3|136980465|136992088|+|4|circRNA|IL20RB|NM_144717|2,3,4,5 | circIL20RB(2,3,4,5).A | IL20RB | LGGTAPSARQNVWRCKMKWPFCLPLRTSLYSQPT | LGGTAPSARQNVWR | No | Alternative | Junction | 14 | 2 | TTG | TGA | TransCirc | No |
chr3|138221997|138223388|+|1|ciRNA|ARMC8|NM_014154|4 | ciARMC8(4) | ARMC8 | LGSICLASWAGVEMRGSLPFPNERAGERRNYLCLRSCTRALNIPYRLDIYKLHHCSGFRAVAFLV | ALNIPYR | No | Alternative | Alternative | 7 | 1 | TTG | TGA | NA | No |
chr3|138221997|138223388|+|1|ciRNA|ARMC8|NM_014154|4 | ciARMC8(4) | ARMC8 | LGSICLASWAGVEMRGSLPFPNERAGERRNYLCLRSCTRALNIPYRLDIYKLHHCSGFRAVAFLV | LGSICLASWAGVEMRGSLPFPNER | No | Alternative | Alternative | 24 | 1 | TTG | TGA | NA | No |
chr3|138663905|138665203|-|2|circRNA|PIK3CB|NM_001256045|10,9 | circPIK3CB(10,9) | PIK3CB | LDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKKTGQDVALWLFSNRRSLWPH | KTGQDVALWLFSNR | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
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