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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|133746483|133748411|+|1|ciRNA|TF|ENST00000402696.7|1 | ciTF(1) | TF | LARAFPATRAATAQPACTPRSGWKPGCLGAFPLPLYAPPLAFAWASRHLSLHSLSSPPPPLCPVNLAAVKYNKSEHV | AATAQPACTPR | No | Alternative | Alternative | 11 | 1 | CTG | TAA | NA | No |
chr3|133746483|133748411|+|1|ciRNA|TF|ENST00000402696.7|1 | ciTF(1) | TF | LARAFPATRAATAQPACTPRSGWKPGCLGAFPLPLYAPPLAFAWASRHLSLHSLSSPPPPLCPVNLAAVKYNKSEHV | LARAFPATR | No | Alternative | Alternative | 9 | 1 | CTG | TAA | NA | No |
chr3|133746483|133748411|+|1|ciRNA|TF|ENST00000402696.7|1 | ciTF(1) | TF | MGTLEAGLCGGAATGLCCLLGFPMGQEGKWGSLGWPSLVAPPHASWRAVGLLSTGFVDLLQSQ | WGSLGWPSLVAPPHASWR | No | Alternative | Alternative | 18 | 1 | ATG | TGA | NA | No |
chr3|133757009|133757767|+|1|ciRNA|TF|ENST00000402696.7|7 | ciTF(7) | TF | LVTTQGSLWISHVSCSHRCLNPFRETGTEAGSGKSRTHEGYRQRKCWVSRSRSDCPLSWHLELFHVVSCRDFFSLQSHFSASFLLCCHPLFCFSMNSIPTCHPPLQLSAPCLDLGVFLLAILSLWKSVCSGYSGSHATCH | ETGTEAGSGKSR | No | Alternative | Junction | 12 | 2 | CTG | TAA | NA | No |
chr3|133973662|133979618|-|2|circRNA|SLCO2A1|ENST00000310926.8|3,2 | circSLCO2A1(3,2) | SLCO2A1 | LCSAKASCSSANSCTAPTSRAASPPLRSALGSPVLHRVSFPA | AASPPLRSALGSPVLHR | No | Alternative | Alternative | 17 | 3 | TTG | TGA | TransCirc | No |
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