top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|132474931|132478140|+|3|circRNA|DNAJC13|ENST00000260818.10|22,23,24 | circDNAJC13(22,23,24) | DNAJC13 | MFTSPCYCLWQMSRRNRTFYRYQIYHWNVREGLVKTMPGQTLFGISKHEKN | EGLVKTMPGQTLFGISK | No | Junction | Junction | 17 | 1 | ATG | TGA | TransCirc | No |
chr3|132525609|132531097|+|4|circRNA|DNAJC13|ENST00000260818.10|52,53,54,55 | circDNAJC13(52,53,54,55) | DNAJC13 | LCRSSVWSAFKDQKHDLFISESQTAGYLTGRNSGNLDNGNSVSLQRTTSAGRSGPAIGPSSQSYPGNES | NSGNLDNGNSVSLQR | No | Alternative | Junction | 15 | 1 | CTG | TAG | TransCirc | No |
chr3|132575771|132605205|-|5|circRNA|ACAD11|ENST00000496418.5|16,15,14,13,12 | circACAD11(16,15,14,13,12) | ACAD11 | MRTVGLAERALQIMCERATQRIAFKKKLYAHTQGIWRFCTCMEVRNRRNSGLSLFFKGTLPLASV | KLYAHTQGIWR | No | Junction | Junction | 11 | 3 | ATG | TGA | TransCirc | No |
chr3|132618633|132644896|-|10|circRNA|ACAD11|ENST00000496418.5|11,10,9,8,7,6,5,4,3,2 | circACAD11(11,10,9,8,7,6,5,4,3,2) | ACAD11 | LLKKQENAFLLQMSLTAKHQSRKVQSNLLSPEGLSNICAQEKTTRFTSS | KVQSNLLSPEGLSNICAQEK | No | Alternative | Junction | 20 | 2 | TTG | TAA | NA | No |
chr3|132686259|132688891|-|3|circRNA|NPHP3-ACAD11|NR_037804|22,21,20 | circNPHP3-ACAD11(22,21,20) | NPHP3-ACAD11 | LIMLGPSMNWVFSTIFKITWSHSTFAEVFRDSRNSFRSRSPKSSPVPPPTSKCIRAVEEVWQCRTTV | DSRNSFR | No | Alternative | Junction | 7 | 2 | CTG | TAA | TransCirc | No |
Page 1 of 1
bottom of page