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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|128262127|128264781|+|2|circRNA|EEFSEC|ENST00000254730.10|3,4 | circEEFSEC(3,4) | EEFSEC | LTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVPRCTDYTRGGQAGGTRGPRN | GGQAGGTRGPR | Yes | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | No |
chr3|128264616|128341889|+|2|circRNA|EEFSEC|ENST00000254730.10|4,5 | circEEFSEC(4,5) | EEFSEC | LTLSCWSAGWCVPPSPCTLSMRPSSLWKRYRISGGPCKPRPSSTLQWAMKQSWAG | ISGGPCKPRPSSTLQWAMK | No | Alternative | Alternative | 19 | 2 | TTG | TGA | TransCirc | No |
chr3|128341232|128341889|+|1|circRNA|EEFSEC|ENST00000254730.10|5 | circEEFSEC(5) | EEFSEC | LPSAVPGDWLQARCGHSHQHVPASLPWHPAPRARGQELRRQLPAQAEGVQAEAQAWPCGAGGEEGEVHADVPHAHHFSHARRPAGHLRHPV | RPAGHLR | No | Alternative | Junction | 7 | 3 | CTG | TGA | TransCirc | No |
chr3|12840242|12841493|-|1|ciRNA|RPL32|ENST00000429711.6|1 | ciRPL32(1) | RPL32 | MSAHVYSFMPWPASSAAVSGPRAAAAGPPRKDEL | AAAAGPPR | No | Alternative | Alternative | 8 | 2 | ATG | TAG | NA | No |
chr3|12840242|12841493|-|1|ciRNA|RPL32|ENST00000429711.6|1 | ciRPL32(1) | RPL32 | MSAHVYSFMPWPASSAAVSGPRAAAAGPPRKDEL | MSAHVYSFMPWPASSAAVSGPR | No | Alternative | Alternative | 22 | 2 | ATG | TAG | NA | No |
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