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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|121509560|121544906|-|11|circRNA|POLQ|NM_199420|12,11,10,9,8,7,6,5,4,3,2 | circPOLQ(12,11,10,9,8,7,6,5,4,3,2) | POLQ | LQRAMKGFVLENDLHILYLENASLQFLTTKETSYYWQTGDFLKQFWKNTTVLV | ENASLQFLTTK | No | Alternative | Junction | 11 | 3 | CTG | TAA | TransCirc | No |
chr3|121509560|121544906|-|11|circRNA|POLQ|NM_199420|12,11,10,9,8,7,6,5,4,3,2 | circPOLQ(12,11,10,9,8,7,6,5,4,3,2) | POLQ | LQRAMKGFVLENDLHILYLENASLQFLTTKETSYYWQTGDFLKQFWKNTTVLV | ENASLQFLTTKETSYYWQTGDFLK | No | Alternative | Junction | 24 | 3 | CTG | TAA | TransCirc | No |
chr3|121509560|121544906|-|11|circRNA|POLQ|NM_199420|12,11,10,9,8,7,6,5,4,3,2 | circPOLQ(12,11,10,9,8,7,6,5,4,3,2) | POLQ | LQRAMKGFVLENDLHILYLENASLQFLTTKETSYYWQTGDFLKQFWKNTTVLV | ETSYYWQTGDFLK | No | Alternative | Junction | 13 | 3 | CTG | TAA | TransCirc | No |
chr3|121509560|121544906|-|11|circRNA|POLQ|NM_199420|12,11,10,9,8,7,6,5,4,3,2 | circPOLQ(12,11,10,9,8,7,6,5,4,3,2) | POLQ | LQRAMKGFVLENDLHILYLENASLQFLTTKETSYYWQTGDFLKQFWKNTTVLV | ETSYYWQTGDFLKQFWK | No | Alternative | Junction | 17 | 3 | CTG | TAA | TransCirc | No |
chr3|121519870|121539589|-|6|circRNA|POLQ|NM_199420|9,8,7,6,5,4 | circPOLQ(9,8,7,6,5,4) | POLQ | LAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVESVSGSRNKSRRLYGQHLSIKAFLFIGYCSLHN | KGVDTVESVSGSR | No | Junction | Junction | 13 | 3 | TTG | TGA | TransCirc | No |
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