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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|113280663|113281027|+|1|ciRNA|BOC|NM_033254|14 | ciBOC(14) | BOC | LPQLSLTMRLGSRKPYTHCHAPFSDSVSVRHSSVFIASA | KPYTHCHAPFSDSVSVR | No | Junction | Junction | 17 | 2 | CTG | TGA | NA | No |
chr3|113420016|113433669|-|4|circRNA|CFAP44|ENST00000393845.6|5,4,3,2 | circCFAP44(5,4,3,2) | CFAP44 | LDDSIAIYIAGNQLIFLNLKTKEQIYLRSSSGEGIGVIGRK | SSSGEGIGVIGR | No | Junction | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr3|113460616|113499582|-|9|circRNA|SPICE1|ENST00000295872.8|12,11,10,9,8,7,6,5,4 | circSPICE1(12,11,10,9,8,7,6,5,4) | SPICE1 | MVTTDEQLISLTHAIKNCPVINNRQEIQASESGATGRRVMDSPGTPS | VMDSPGTPS | No | Junction | Junction | 9 | 1 | ATG | TGA | TransCirc | No |
chr3|113612085|113619726|+|3|circRNA|SIDT1|ENST00000264852.8|19,20,21 | circSIDT1(19,20,21) | SIDT1 | MVLLVVGNLVNWSLCLEKMTYGSGSSSLQSTFWPR | MTYGSGSSSLQSTFWPR | No | Alternative | Junction | 17 | 1 | ATG | TAG | TransCirc | No |
chr3|114350273|114351878|-|1|circRNA|ZBTB20|NM_001164342|4 | circZBTB20(4) | ZBTB20 | LATATSRSRRWCQCSQCKSSLTSCTAACYGSRSRKLCRSSRPPASCRSKQSSTSARASCHRTWAMCSRGSRTRARTRRGALPSQARQARAATRSRATCRATHSTAWTGSTRHSTRAPCRMAAASALFTAAQWSATTRLRSACPATTTWKTPAGSHASMSARSRWSATCPPPPRPRTAASSPGLCASRP | ASCHRTWAMCSR | No | Alternative | Alternative | 12 | 1 | TTG | TAG | riboCIRC,TransCirc | No |
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