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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|10312755|10315320|-|1|ciRNA|SEC13|NM_001136232|3 | ciSEC13(3) | SEC13 | LLSGEWIKIRREGKDMPFEQIKRVVENIKMKPIMPPQEADRREG | MKPIMPPQEADRR | No | Alternative | Alternative | 13 | 2 | CTG | TGA | NA | No |
chr3|10312755|10315320|-|1|ciRNA|SEC13|NM_001136232|3 | ciSEC13(3) | SEC13 | LQRHCGFVSAGEPREGLQEWCGFSGPASSVGAKHGSPDSEQPQSTFSGEDAGIPASLAVLSGRPQG | EGLQEWCGFSGPASSVGAK | No | Alternative | Junction | 19 | 1 | CTG | TGA | NA | No |
chr3|105720046|105776542|-|7|circRNA|CBLB|ENST00000264122.8|10,9,8,7,6,5,4 | circCBLB(10,9,8,7,6,5,4) | CBLB | MPMLDLDDDDDREESLMMNRLANVRKTKSHKTVPYLQSHAGRNQSNLSQWSIPGR | NQSNLSQWSIPGR | No | Alternative | Junction | 13 | 1 | ATG | TAA | TransCirc | No |
chr3|105720046|105776542|-|7|circRNA|CBLB|ENST00000264122.8|10,9,8,7,6,5,4 | circCBLB(10,9,8,7,6,5,4) | CBLB | MPMLDLDDDDDREESLMMNRLANVRKTKSHKTVPYLQSHAGRNQSNLSQWSIPGR | SHKTVPYLQSHAGR | No | Alternative | Junction | 14 | 1 | ATG | TAA | TransCirc | No |
chr3|105720046|105776542|-|7|circRNA|CBLB|ENST00000264122.8|10,9,8,7,6,5,4 | circCBLB(10,9,8,7,6,5,4) | CBLB | MPMLDLDDDDDREESLMMNRLANVRKTKSHKTVPYLQSHAGRNQSNLSQWSIPGR | TVPYLQSHAGR | No | Alternative | Junction | 11 | 1 | ATG | TAA | TransCirc | No |
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