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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|49775590|49824331|-|11|circRNA|BRD1|NM_001304809|12,11,10,9,8,7,6,5,4,3,2 | circBRD1(12,11,10,9,8,7,6,5,4,3,2) | BRD1 | LHPVPQSKLLHSIPCDVCPEGWPVHENGAREGTDWRWHHLLRQKDRLL | EGTDWRWHHLLR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | TransCirc | No |
chr22|49775590|49824331|-|11|circRNA|BRD1|NM_001304809|12,11,10,9,8,7,6,5,4,3,2 | circBRD1(12,11,10,9,8,7,6,5,4,3,2) | BRD1 | LREPEAGRAAVSDRRGRRVLHLHGRGVSEQQRDPLLRHVQPGRAPGVLRGALHPRGPVALPPLPAVAGPARRLCAVPQQGWCLQKDR | GVSEQQRDPLLR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | TransCirc | No |
chr22|49777814|49787389|-|1|ciRNA|BRD1|NM_001304809|8 | ciBRD1(8) | BRD1 | LEELSPTPAHPLCKSEPGSGNGAGARCTPGAGGMSWHLSLPSGQSRRTQRRARHRLGACCS | LEELSPTPAHPLCK | No | Alternative | Alternative | 14 | 1 | CTG | TGA | NA | No |
chr22|49777814|49787389|-|1|ciRNA|BRD1|NM_001304809|8 | ciBRD1(8) | BRD1 | LGGSGQRRPPCSSPEVLGTPGGGCRASRDVSVSWSGFLASWVTPHCRSPQTAC | LGGSGQR | No | Alternative | Alternative | 7 | 2 | CTG | TAG | NA | No |
chr22|49777814|49787389|-|1|ciRNA|BRD1|NM_001304809|8 | ciBRD1(8) | BRD1 | LGSASVPAVCKCLMDRAPISADLRPWVPHVGPHLKAGLGFRMFWAEVLAGVLRCGSWWTSPSWLEEPPRAGVGRAEIERSQNHSCLRLFSGGPGGGWEGPGSAGHLAAPPRFWGLQAVAAEPPGMCLCPGLASWLPG | LFSGGPGGGWEGPGSAGHLAAPPR | No | Alternative | Alternative | 24 | 1 | TTG | TGA | NA | No |
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