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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|31870589|31876265|+|4|circRNA|DEPDC5|ENST00000535622.5|31,32,33,34 | circDEPDC5(31,32,33,34) | DEPDC5 | MLEEQLITHASGEAWRTFIYGFYFYKIVTDKEPDRGICGPNSHSYVGRHQFGHMHRPIHGQRQQPDLWELPEHRRTGLLLHKLQ | GICGPNSHSYVGR | No | Alternative | Junction | 13 | 1 | ATG | TGA | TransCirc | No |
chr22|31870589|31876265|+|4|circRNA|DEPDC5|ENST00000535622.5|31,32,33,34 | circDEPDC5(31,32,33,34) | DEPDC5 | MLEEQLITHASGEAWRTFIYGFYFYKIVTDKEPDRGICGPNSHSYVGRHQFGHMHRPIHGQRQQPDLWELPEHRRTGLLLHKLQ | HQFGHMHRPIHGQRQQPDLWELPEHR | No | Alternative | Junction | 26 | 1 | ATG | TGA | TransCirc | No |
chr22|33604434|33761558|-|4|circRNA|LARGE|ENST00000354992.6|6,5,4,3 | circLARGE(6,5,4,3) | LARGE | LDGARCACGLLQCRRAQESIMREAEDFMLRTEKRRWD | LDGARCACGLLQCR | No | Alternative | Junction | 14 | 1 | CTG | TAG | TransCirc | No |
chr22|33650366|33761558|-|2|circRNA|LARGE|ENST00000354992.6|4,3 | circLARGE(4,3) | LARGE | LSPLESQAHSPRYTASSQRERESLEVRMREVEEENRALRRQLSLAQGRAPSHRRGNHSKTYSMEEGTGDSENLRAGIVAGNSSECGQQPVVEKCERVL | AGIVAGNSSECGQQPVVEKCER | No | Junction | Junction | 22 | 3 | CTG | TGA | TransCirc | No |
chr22|36285347|36285657|-|1|ciRNA|MYH9|NM_002473|37 | ciMYH9(37) | MYH9 | LLPPSSGPAHALQPGPQPSPRSVGARTSPTLGSGWSHHGRAGLGPSRQKHRPSASCSPGA | AGLGPSR | No | Alternative | Junction | 7 | 2 | CTG | TAG | NA | No |
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