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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|69899285|69899498|+|1|circRNA|AUTS2|NM_001127232|2 | circAUTS2(2) | AUTS2 | MACPFIQRRADSATHTTTAQIEKMTAISASTLGRERKCRRHSDRKM | MTAISASTLGRER | No | Alternative | Junction | 13 | 2 | ATG | TAG | riboCIRC | No |
chr7|72830691|72831798|+|2|circRNA|SBDSP1|NR_001588|2,3 | circSBDSP1(2,3) | SBDSP1 | LEQMFRDIAIIVADKCVTPETKRPYTVILIERAMKDIHYLVKTNRSTKQQGKRP | LEQMFRDIAIIVADK | No | Alternative | Junction | 15 | 3 | CTG | TGA | TransCirc | No |
chr7|72969591|72970119|+|2|rescued|ENST00000436857|ENST00000436857|337,127|0,401 | circENST00000436857(L1L,S2L) | ENST00000436857 | LKDVIREGAGDLVAPDASVLGTPWGGLSAGSMSSHSCDLCSSRAREGQGRWRRLERNDECLLVAPEWNAAVGRGLPGIKGPSEPHQSHSQEGQRGAPGRRLTPQGGQLGHGGKRVKPGSPGRGRRPRPGEGPDVGA | NDECLLVAPEWNAAVGR | Yes | Alternative | Junction | 17 | 1 | CTG | TAG | NA | No |
chr7|72969591|72970119|+|2|rescued|ENST00000436857|ENST00000436857|337,127|0,401 | circENST00000436857(L1L,S2L) | ENST00000436857 | LKDVIREGAGDLVAPDASVLGTPWGGLSAGSMSSHSCDLCSSRAREGQGRWRRLERNDECLLVAPEWNAAVGRGLPGIKGPSEPHQSHSQEGQRGAPGRRLTPQGGQLGHGGKRVKPGSPGRGRRPRPGEGPDVGA | VKPGSPGR | Yes | Alternative | Junction | 8 | 1 | CTG | TAG | NA | No |
chr7|72999760|73003730|-|4|circRNA|STAG3L3|ENST00000436857.5|5,4,3,2 | circSTAG3L3(5,4,3,2) | STAG3L3 | LKGLYGNRDLTARLELFTGRFKTRRQENDLRTASIAV | DLTARLELFTGR | No | Alternative | Junction | 12 | 1 | CTG | TGA | NA | No |
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