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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|27999260|28001373|-|1|ciRNA|TTC28|ENST00000612946.4|13 | ciTTC28(13) | TTC28 | MRIVEQAGCPGFHGLCPLCHIKASSPNPLRTPTIQS | ASSPNPLR | No | Alternative | Alternative | 8 | 1 | ATG | TGA | NA | No |
chr22|27999260|28001373|-|1|ciRNA|TTC28|ENST00000612946.4|13 | ciTTC28(13) | TTC28 | MRIVEQAGCPGFHGLCPLCHIKASSPNPLRTPTIQS | ASSPNPLRTPTIQS | No | Alternative | Alternative | 14 | 1 | ATG | TGA | NA | No |
chr22|28094079|28108403|-|6|circRNA|TTC28|ENST00000612946.4|10,9,8,7,6,5 | circTTC28(10,9,8,7,6,5) | TTC28 | MLPRAVPMGIWAMPTMPWACTTRRSNTIGRSCRSPWK | AVPMGIWAMPTMPWACTTR | No | Alternative | Alternative | 19 | 2 | ATG | TGA | TransCirc | No |
chr22|28094079|28108403|-|6|circRNA|TTC28|ENST00000612946.4|10,9,8,7,6,5 | circTTC28(10,9,8,7,6,5) | TTC28 | MLPRAVPMGIWAMPTMPWACTTRRSNTIGRSCRSPWK | AVPMGIWAMPTMPWACTTRR | No | Alternative | Alternative | 20 | 2 | ATG | TGA | TransCirc | No |
chr22|28163091|28163599|-|1|circRNA|TTC28|ENST00000612946.4|4 | circTTC28(4) | TTC28 | LSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGSFISLEQSGPRVHSHWRLPQCTGQSQTVCSSCQAIQR | ASSNLGSFISLEQSGPR | No | Junction | Junction | 17 | 1 | TTG | TGA | TransCirc | No |
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