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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|19802000|19821375|-|5|circRNA|GNB1L|ENST00000329517.10|7,6,5,4,3 | circGNB1L(7,6,5,4,3) | GNB1L | LAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQALQVTASCPA | ALAVWSLDWQQALQVTASCPA | No | Junction | Junction | 21 | 1 | CTG | TGA | TransCirc | No |
chr22|19802000|19821375|-|5|circRNA|GNB1L|ENST00000329517.10|7,6,5,4,3 | circGNB1L(7,6,5,4,3) | GNB1L | MRMDRWSCGTSLSRRCAAASPAMRSPSWTLTLTPRRPGASQAPRGRRWLSGAWTGSRPCR | CAAASPAMR | No | Alternative | Alternative | 9 | 2 | ATG | TAA | TransCirc | No |
chr22|19961198|19964299|+|4|circRNA|COMT|ENST00000361682.10|2,3,4,5 | circCOMT(2,3,4,5) | COMT | LEGPVPAGHASLGEITSALLPSSEETPDPSRSQRAGACSEVL | LEGPVPAGHASLGEITSALLPSSEETPDPSR | No | Junction | Junction | 31 | 3 | CTG | TGA | TransCirc | No |
chr22|19961198|19964299|+|4|circRNA|COMT|ENST00000361682.10|2,3,4,5 | circCOMT(2,3,4,5) | COMT | LEGPVPAGHASLGEITSALLPSSEETPDPSRSQRAGACSEVL | LEGPVPAGHASLGEITSALLPSSEETPDPSRSQR | No | Junction | Junction | 34 | 3 | CTG | TGA | TransCirc | No |
chr22|19975778|19977414|-|1|ciRNA|ARVCF|ENST00000495096.5|3 | ciARVCF(3) | ARVCF | LGRRELCPTLLIHPFPIWGLPHLWVGRTGVSSLPSQLLPQRKALCTPTAAHHGG | TGVSSLPSQLLPQR | No | Alternative | Junction | 14 | 3 | CTG | TAG | NA | No |
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